RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SYPL1Q16563 259 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 TRMT5Q32P41 509 aaKnown RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 C4orf17Q53FE4 359 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 EIPR1Q53HC9 387 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 NHSL2Q5HYW2 709 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 PDZK1Q5T2W1 519 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 FRRS1Q6ZNA5 592 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 EIF3MQ7L2H7 374 aaKnown RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 FGD2Q7Z6J4 655 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SNX32Q86XE0 403 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 OR14L1PQ8NHC6 308 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 B4GALNT2Q8NHY0 566 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SLC38A5Q8WUX1 472 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 RELTQ969Z4 430 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 C1GALT1C1Q96EU7 318 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 CCT8L2Q96SF2 557 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 CPPED1Q9BRF8 314 aaPredicted RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 CCDC106Q9BWC9 280 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 MYLK2Q9H1R3 596 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SLC38A1Q9H2H9 487 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SLC6A15Q9H2J7 730 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 A4GALTQ9NPC4 353 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 ARMCX1Q9P291 453 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 ACAD8Q9UKU7 415 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SLC35A3Q9Y2D2 325 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 LIPGQ9Y5X9 500 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 PCNX3Q9H6A9 2034 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 PCNX1Q96RV3 2341 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 NCKAP5O14513 1909 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 C15orf38-AP3S2A0A0A6YYH1 394 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 NPIPA5A0A0B4J1W7 369 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 TRGV8A0A0C4DH27 118 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 AGAP5A6NIR3 686 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 FAM47E-STBD1D6RA91 191 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 NPIPA2E9PIF3 369 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 NPIPA7E9PJI5 369 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 NPIPA3F8WFD2 350 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 MRASO14807 208 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 HCRTR2O43614 444 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 SHOX2O60902 331 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 ZIC2O95409 532 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 FAM107AO95990 144 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 TPOP07202 933 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 CHRM4P08173 479 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 HOXD4P09016 255 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 NPIPA8P0DM63 369 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 SUMO3P55854 103 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 SF3B4Q15427 424 aaKnown RBP eCLIP12.96□□□□□ -0.33
NUP54-216ENST00000514901 CD226Q15762 336 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 ZSWIM7Q19AV6 140 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 GXYLT1Q4G148 440 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 WIPI1Q5MNZ9 446 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 GCNT6Q5T4J0 391 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 WLSQ5T9L3 541 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 MTFR2Q6P444 385 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 AAGABQ6PD74 315 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 YRDCQ86U90 279 aaKnown RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 IFNEQ86WN2 208 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 CMIPQ8IY22 773 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 PEX5LQ8IYB4 626 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 ZNF614Q8N883 585 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 ANKS4BQ8N8V4 417 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 GATSQ8NAP1 163 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 TOR1AIP2Q8NFQ8 470 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 ABTB1Q969K4 478 aaPredicted RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 LRRC58Q96CX6 371 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 CMTM5Q96DZ9 223 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 THUMPD3Q9BV44 507 aaKnown RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 LAT2Q9GZY6 243 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 TMEM38AQ9H6F2 299 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 CACYBPQ9HB71 228 aaKnown RBP12.96□□□□□ -0.33
NUP54-216ENST00000514901 BCL2L10Q9HD36 194 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 SLC5A6Q9Y289 635 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 RELNP78509 3460 aa12.96□□□□□ -0.33
NUP54-216ENST00000514901 LRRK2Q5S007 2527 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 C5orf58C9J3I9 102 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 ZNF264O43296 627 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 DCTN3O75935 186 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 CSTAP01040 98 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 DBIP07108 87 aaKnown RBP12.95□□□□□ -0.34
NUP54-216ENST00000514901 UBL4AP11441 157 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 COX4I1P13073 169 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 HK1P19367 917 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 CHMP24386 653 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 PRDX6P30041 224 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 PTGER4P35408 488 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 P2RX1P51575 399 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 PER3P56645 1201 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 KCNJ10P78508 379 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 FGFBP1Q14512 234 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 MAPK11Q15759 364 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 C3AR1Q16581 482 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 GKAP1Q5VSY0 366 aaPredicted RBP12.95□□□□□ -0.34
NUP54-216ENST00000514901 REP15Q6BDI9 236 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 VASNQ6EMK4 673 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 ENPP6Q6UWR7 440 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 DOLPP1Q86YN1 238 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 PM20D2Q8IYS1 436 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 FAM26EQ8N5C1 309 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms