RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CHST8Q9H2A9 424 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 LRRN3Q9H3W5 708 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 MYNNQ9NPC7 610 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 SH2B3Q9UQQ2 575 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 UCHL1P09936 223 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 CEBPBP17676 345 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 METAP1P53582 386 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 ERVK-25P63136 954 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 TCEAL5Q5H9L2 206 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 PIP5KL1Q5T9C9 394 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 CD276Q5ZPR3 534 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 PYHIN1Q6K0P9 492 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 RPTNQ6XPR3 784 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 TMEM91Q6ZNR0 172 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 LRRTM4Q86VH4 590 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 FAM26EQ8N5C1 309 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 OR5M3Q8NGP4 307 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 OR13C5Q8NGS8 318 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 TREX2Q9BQ50 279 aaPredicted RBP9.02□□□□□ -0.97
VCAN-210ENST00000513960 TMEM38AQ9H6F2 299 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 AUNIPQ9H7T9 357 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 COPZ2Q9P299 210 aa9.02□□□□□ -0.97
VCAN-210ENST00000513960 AK6Q9Y3D8 172 aaKnown RBP9.02□□□□□ -0.97
VCAN-210ENST00000513960 ARID1BQ8NFD5 2236 aaPredicted RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 A0A1B0GVI7 797 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 STX11O75558 287 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 MTRF1O75570 445 aaKnown RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 RP2O75695 350 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 FGBP02675 491 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 HNRNPA1P09651 372 aaKnown RBP eCLIP9.01□□□□□ -0.97
VCAN-210ENST00000513960 ACP5P13686 325 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 PYCR1P32322 319 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 IRS1P35568 1242 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 PXNP49023 591 aaPredicted RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 LIMK1P53667 647 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 HYAL4Q2M3T9 481 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 SLC25A35Q3KQZ1 300 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 SFXN4Q6P4A7 337 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 RTL10Q7L3V2 364 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 C17orf64Q86WR6 236 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ZNF687Q8N1G0 1237 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 GOT1L1Q8NHS2 421 aaPredicted RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 SETD7Q8WTS6 366 aaKnown RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 ZC3HAV1LQ96H79 300 aaKnown RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 GPA33Q99795 319 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 GAL3ST1Q99999 423 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ARHGAP9Q9BRR9 750 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ALG8Q9BVK2 526 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ZNF436Q9C0F3 470 aaPredicted RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 CRISPLD2Q9H0B8 497 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 C11orf49Q9H6J7 331 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 LIN7BQ9HAP6 207 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 IL23AQ9NPF7 189 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 DEC1Q9P2X7 70 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 P2RX2Q9UBL9 471 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 STK25O00506 426 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 HPXP02790 462 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 GCGRP47871 477 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 STARP49675 285 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 MINDY4Q4G0A6 757 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 FAM71E1Q6IPT2 247 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 NLRC3Q7RTR2 1065 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 CXorf40AQ8TE69 158 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 MARC2Q969Z3 335 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ARRDC3Q96B67 414 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ARSGQ96EG1 525 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 WDR34Q96EX3 536 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ZNF416Q9BWM5 594 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 DPEP2Q9H4A9 486 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 DLL4Q9NR61 685 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 SAGE1Q9NXZ1 904 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 EDDM13A0A1B0GTR0 161 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 C17orf113A0A1B0GUU1 675 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 TMEM129A0AVI4 362 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 RNF13O43567 381 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 UBXN7O94888 489 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 CISD3P0C7P0 127 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ADRB3P13945 408 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 TRIM23P36406 574 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 UBE2MP61081 183 aaKnown RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 HTRA4P83105 476 aaPredicted RBP9.01□□□□□ -0.97
VCAN-210ENST00000513960 HTRA3P83110 453 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 DUSP6Q16828 381 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 C18orf63Q68DL7 685 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 NRMQ8IXM6 262 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 DOK4Q8TEW6 326 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 TNFAIP8L1Q8WVP5 186 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 CHFRQ96EP1 664 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 SORCS2Q96PQ0 1159 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 MED18Q9BUE0 208 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 TRIM36Q9NQ86 728 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 RPS6KB2Q9UBS0 482 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 NTNG1Q9Y2I2 539 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 ASB4Q9Y574 426 aa9.01□□□□□ -0.97
VCAN-210ENST00000513960 HMGA2P52926 109 aa9□□□□□ -0.97
VCAN-210ENST00000513960 ELOAQ14241 798 aaKnown RBP9□□□□□ -0.97
VCAN-210ENST00000513960 ELAVL3Q14576 367 aaKnown RBP9□□□□□ -0.97
VCAN-210ENST00000513960 ATXN7L3Q14CW9 347 aaPredicted RBP9□□□□□ -0.97
VCAN-210ENST00000513960 MPEG1Q2M385 716 aa9□□□□□ -0.97
VCAN-210ENST00000513960 HNRNPA1L2Q32P51 320 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms