RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SEC14L3Q9UDX4 400 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.17□□□□□ -1.74
NUP54-206ENST00000508465 FETUBQ9UGM5 382 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 PHF11Q9UIL8 331 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 SH3BGRL2Q9UJC5 107 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 ERRFI1Q9UJM3 462 aaPredicted RBP4.17□□□□□ -1.74
NUP54-206ENST00000508465 GRID1Q9ULK0 1009 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 SNX6Q9UNH7 406 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 ERVK-11Q9UQG0 969 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 ERVK-19Q9WJR5 959 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 YARS2Q9Y2Z4 477 aaKnown RBP4.17□□□□□ -1.74
NUP54-206ENST00000508465 PTGDR2Q9Y5Y4 395 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 CENPEQ02224 2701 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 SVILO95425 2214 aa4.17□□□□□ -1.74
NUP54-206ENST00000508465 USP9XQ93008 2570 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 ADGRG4Q8IZF6 3080 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 TACC2O95359 2948 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 NUP210LQ5VU65 1888 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 TRGV8A0A0C4DH27 118 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ZNF785A8K8V0 405 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 FAM166BA8MTA8 275 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 FCHO1O14526 889 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ASNA1O43681 348 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 NME2P1O60361 137 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CDC40O60508 579 aaKnown RBP eCLIP4.16□□□□□ -1.74
NUP54-206ENST00000508465 ZG16O60844 167 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CDH16O75309 829 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CRCPO75575 148 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SCELO95171 688 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 MLYCDO95822 493 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CRYABP02511 175 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 KRT6AP02538 564 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CLPSP04118 112 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 KRT6BP04259 564 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CT62P0C5K7 136 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 LINC00032P0C843 101 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SLC35E2P0CK97 266 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 COX7A2P14406 83 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PORP16435 677 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 RHCEP18577 417 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 NT5EP21589 574 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PIK3R1P27986 724 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 HMOX2P30519 316 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ALDH3A1P30838 453 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DEKP35659 375 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 PIGAP37287 484 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 KRT6CP48668 564 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 TDGF1P3P51864 188 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PKNOX1P55347 436 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 LINC00205P59089 165 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DNAJB13P59910 316 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 IGLV3-21P80748 117 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 SLC18A2Q05940 514 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 C2orf80Q0P641 193 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 LCP2Q13094 533 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 EXOSC7Q15024 291 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 RASA2Q15283 850 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 LTB4RQ15722 352 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 TMEM95Q3KNT9 176 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SFRP4Q6FHJ7 346 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 NCCRP1Q6ZVX7 275 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 PAGE2Q7Z2X7 111 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 LCA5Q86VQ0 697 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 FJX1Q86VR8 437 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SLC22A9Q8IVM8 553 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 C9orf40Q8IXQ3 194 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 PRR22Q8IZ63 422 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CYP4Z2PQ8N1L4 340 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ZCCHC7Q8N3Z6 543 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 FAM109AQ8N4B1 249 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 HORMAD2Q8N7B1 307 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 NRACQ8N912 160 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 BANPQ8N9N5 519 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ST6GALNAC3Q8NDV1 305 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 OR14A16Q8NHC5 309 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CDC26Q8NHZ8 85 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ADAMTS18Q8TE60 1221 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 AGAP11Q8TF27 550 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 C16orf78Q8WTQ4 265 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SSC4DQ8WTU2 575 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 JADE3Q92613 823 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 KAT2AQ92830 837 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 L3HYPDHQ96EM0 354 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DAZAP1Q96EP5 407 aaKnown RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 SCMH1Q96GD3 660 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 APIPQ96GX9 242 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 MRGPRX4Q96LA9 322 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 FAM111AQ96PZ2 611 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 RASL10BQ96S79 203 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 SLX1AQ9BQ83 275 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 GATA5Q9BWX5 397 aaPredicted RBP4.16□□□□□ -1.74
NUP54-206ENST00000508465 EBPLQ9BY08 206 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 ACPTQ9BZG2 426 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CENPHQ9H3R5 247 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 WDR41Q9HAD4 459 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 CXorf21Q9HAI6 301 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DUSP22Q9NRW4 184 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 DEPPQ9NTK1 212 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 MS4A12Q9NXJ0 267 aa4.16□□□□□ -1.74
NUP54-206ENST00000508465 HEY2Q9UBP5 337 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms