RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TRPM8Q7Z2W7 1104 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 ERASQ7Z444 233 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 CEND1Q8N111 149 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 C14orf178Q8N769 122 aaPredicted RBP2.4□□□□□ -2.03
VPS50-219ENST00000495039 ZNF721Q8TF20 911 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 TRUB1Q8WWH5 349 aaKnown RBP2.4□□□□□ -2.03
VPS50-219ENST00000495039 PSMG2Q969U7 264 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 SDSLQ96GA7 329 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 C16orf74Q96GX8 76 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 TMEM121Q9BTD3 319 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 FICDQ9BVA6 458 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 NMUR2Q9GZQ4 415 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 Q9H3A6 140 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 PLSCR3Q9NRY6 295 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 TMEM9Q9P0T7 183 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 SAMD4AQ9UPU9 718 aaKnown RBP2.4□□□□□ -2.03
VPS50-219ENST00000495039 RNF6Q9Y252 685 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 PPIAL4AQ9Y536 164 aa2.4□□□□□ -2.03
VPS50-219ENST00000495039 CARMIL1Q5VZK9 1371 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 A0A0U1RQV5 110 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 FAM74A7A6NL05 159 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 C19orf81C9J6K1 198 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 SCGB2A1O75556 95 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 SCRG1O75711 98 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 ATP5A1P25705 553 aaKnown RBP2.39□□□□□ -2.03
VPS50-219ENST00000495039 ADORA2BP29275 332 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 CAMLGP49069 296 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 WNT4P56705 351 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 RPL8P62917 257 aaKnown RBP2.39□□□□□ -2.03
VPS50-219ENST00000495039 NTHL1P78549 312 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 MRPS11P82912 194 aaKnown RBP2.39□□□□□ -2.03
VPS50-219ENST00000495039 BDH1Q02338 343 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 DPYSL3Q14195 570 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 KYAT1Q16773 422 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 FAM74A3Q4VXF1 159 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 ZNF311Q5JNZ3 666 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 FAM120AOSQ5T036 256 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 ZNF544Q6NX49 715 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 LRRC8BQ6P9F7 803 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 LANCL3Q6ZV70 420 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 FRA10AC1Q70Z53 315 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 LHFPL4Q7Z7J7 247 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 SERPINA9Q86WD7 417 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 OR2T33Q8NG76 320 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 OR2L5Q8NG80 312 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 OR9A4Q8NGU2 314 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 ZNF564Q8TBZ8 553 aaPredicted RBP2.39□□□□□ -2.03
VPS50-219ENST00000495039 SELENOMQ8WWX9 145 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 VPS35Q96QK1 796 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 RWDD1Q9H446 243 aaPredicted RBP2.39□□□□□ -2.03
VPS50-219ENST00000495039 EHD1Q9H4M9 534 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 ECT2Q9H8V3 914 aa2.39□□□□□ -2.03
VPS50-219ENST00000495039 TMEM110-MUSTN1A8MSY1 372 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 DUX1O43812 170 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 TBL1XO60907 577 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 OR4F21O95013 312 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 AKR7A3O95154 331 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 IGHV3-23P01764 117 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 STSP08842 583 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 HBQ1P09105 142 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 TNNI3P19429 210 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 MDKP21741 143 aaPredicted RBP2.38□□□□□ -2.03
VPS50-219ENST00000495039 KIF5BP33176 963 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 ADRA1AP35348 466 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 RPL29P47914 159 aaKnown RBP2.38□□□□□ -2.03
VPS50-219ENST00000495039 GPC3P51654 580 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 RIPPLY3P57055 190 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 OC90Q02509 493 aaPredicted RBP2.38□□□□□ -2.03
VPS50-219ENST00000495039 RGS1Q08116 209 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 PDZK1IP1Q13113 114 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 OR2B11Q5JQS5 317 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 NIPAL3Q6P499 406 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 ARSKQ6UWY0 536 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 CATSPER4Q7RTX7 472 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 TMEM179BQ7Z7N9 219 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 TMEM110Q86TL2 294 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 GCNT2Q8N0V5 402 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 CNIH3Q8TBE1 160 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 ANKRD49Q8WVL7 239 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 ARNTL2Q8WYA1 636 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 FAM104AQ969W3 186 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 MARC2Q969Z3 335 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 HAVCR1Q96D42 359 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 SLC30A2Q9BRI3 323 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 CNPY3Q9BT09 278 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 GSDMCQ9BYG8 508 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 CAB39LQ9H9S4 337 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 AGPAT5Q9NUQ2 364 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 MRPL39Q9NYK5 338 aaKnown RBP2.38□□□□□ -2.03
VPS50-219ENST00000495039 ACTR3BQ9P1U1 418 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 ANKMY1Q9P2S6 941 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 SPRR3Q9UBC9 169 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 CYTH4Q9UIA0 394 aa2.38□□□□□ -2.03
VPS50-219ENST00000495039 OR6C65A6NJZ3 312 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 F8WDY8 70 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 K7ENP7 123 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 SDHDO14521 159 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 JAK2O60674 1132 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 LYPLA1O75608 230 aaPredicted RBP2.37□□□□□ -2.03
VPS50-219ENST00000495039 GPX5O75715 221 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms