RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ADGRG7Q96K78 797 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 TSSK3Q96PN8 268 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 RRAGDQ9NQL2 400 aaPredicted RBP11.3□□□□□ -0.6
SKA1-205ENST00000494518 PLSCR4Q9NRQ2 329 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 MED17Q9NVC6 651 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 SH3BP4Q9P0V3 963 aa11.3□□□□□ -0.6
SKA1-205ENST00000494518 MXRA5Q9NR99 2828 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 FBN1P35555 2871 aaKnown RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 NPIPA5A0A0B4J1W7 369 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 SMIM23A6NLE4 172 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 ALG1L2C9J202 215 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 NPIPA7E9PJI5 369 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 GLRA3O75311 464 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 KCNK2O95069 426 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 PROCP04070 461 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 NPIPA8P0DM63 369 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 AGTR1P30556 359 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 ZNF41P51814 821 aaPredicted RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 RPL38P63173 70 aaKnown RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 KIAA0040Q15053 153 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 CD226Q15762 336 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 DUSP5Q16690 384 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 PLPPR5Q32ZL2 321 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 GLE1Q53GS7 698 aaKnown RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 MFSD12Q6NUT3 480 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 TRMT10CQ7L0Y3 403 aaKnown RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 GTPBP8Q8N3Z3 284 aaPredicted RBP11.29□□□□□ -0.6
SKA1-205ENST00000494518 SLC16A11Q8NCK7 471 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 OR2T11Q8NH01 316 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 FAM76AQ8TAV0 307 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 POC1BQ8TC44 478 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 ACMSDQ8TDX5 336 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 IGFBPL1Q8WX77 278 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 AKAP1Q92667 903 aaKnown RBP eCLIP11.29□□□□□ -0.6
SKA1-205ENST00000494518 NEUROG1Q92886 237 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 PPCDCQ96CD2 204 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 GIMAP5Q96F15 307 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 LRTM1Q9HBL6 345 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 GIN1Q9NXP7 522 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 DCDC2Q9UHG0 476 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 BAIAP2L1Q9UHR4 511 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 ADAM21Q9UKJ8 722 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 CCL27Q9Y4X3 112 aa11.29□□□□□ -0.6
SKA1-205ENST00000494518 CUBNO60494 3623 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 A0A087WZY1 265 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 HS3ST1O14792 307 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CLOCKO15516 846 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 OIP5O43482 229 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 UROSP10746 265 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 SDC1P18827 310 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 ME2P23368 584 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 PSMA4P25789 261 aaKnown RBP11.28□□□□□ -0.6
SKA1-205ENST00000494518 MAP3K8P41279 467 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 PRIM2P49643 509 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 MANFP55145 182 aaKnown RBP11.28□□□□□ -0.6
SKA1-205ENST00000494518 PRSS12P56730 875 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 FOXF1Q12946 379 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 TNK1Q13470 666 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 VPS26BQ4G0F5 336 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CPTPQ5TA50 214 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 SH2D5Q6ZV89 423 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 NUFIP2Q7Z417 695 aaKnown RBP11.28□□□□□ -0.6
SKA1-205ENST00000494518 ATG4DQ86TL0 474 aaPredicted RBP11.28□□□□□ -0.6
SKA1-205ENST00000494518 COX18Q8N8Q8 333 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CDRT4Q8N9R6 151 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 ATP6V1C2Q8NEY4 427 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CEP70Q8NHQ1 597 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 ZFP28Q8NHY6 868 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 ABHD3Q8WU67 409 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 OSTF1Q92882 214 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 S100PBPQ96BU1 408 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CCDC126Q96EE4 140 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 KLHL15Q96M94 604 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 MS4A4EQ96PG1 132 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 RHOXF2Q9BQY4 288 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 SRXN1Q9BYN0 137 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 CXorf56Q9H5V9 222 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 REEP4Q9H6H4 257 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 C1orf109Q9NX04 203 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 STOML1Q9UBI4 398 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 LAMP3Q9UQV4 416 aa11.28□□□□□ -0.6
SKA1-205ENST00000494518 HEATR1Q9H583 2144 aaKnown RBP11.27□□□□□ -0.6
SKA1-205ENST00000494518 TTC36A6NLP5 189 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 SCDO00767 359 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 ADAMDEC1O15204 470 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 RGS14O43566 566 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 PLIN3O60664 434 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 TUBBP07437 444 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 ALOX5P09917 674 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 LINC00032P0C843 101 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 HPGDP15428 266 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 PPP3CBP16298 524 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 RAC1P63000 192 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 OCRLQ01968 901 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 VEZF1Q14119 521 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 NDUFAF6Q330K2 333 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 GALNTL6Q49A17 601 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 BEND4Q6ZU67 534 aa11.27□□□□□ -0.61
SKA1-205ENST00000494518 ESPNLQ6ZVH7 1005 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms