RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 TRIML2Q8N7C3 387 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 MAPKAPK5-AS1Q8N8E1 139 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF114Q8NC26 417 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 NOA1Q8NC60 698 aaKnown RBP2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 CCDC197Q8NCU1 140 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 DDHD1Q8NEL9 900 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 DDI1Q8WTU0 396 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 HIST1H2ACQ93077 130 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 ABTB1Q969K4 478 aaPredicted RBP2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 PIGTQ969N2 578 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 MCUR1Q96AQ8 359 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 PPP1R16AQ96I34 528 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 SGK494Q96LW2 274 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 TGM7Q96PF1 710 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 NODALQ96S42 347 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 RIT2Q99578 217 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 MCRIP2Q9BUT9 160 aaKnown RBP2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 SDCBP2Q9H190 292 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 RGCCQ9H4X1 137 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 MCCC2Q9HCC0 563 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 SDF2L1Q9HCN8 221 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 STARD5Q9NSY2 213 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 PLEK2Q9NYT0 353 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 EPHA6Q9UF33 1036 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF490Q9ULM2 529 aaPredicted RBP2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 POLDIP2Q9Y2S7 368 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 USP16Q9Y5T5 823 aa2.79□□□□□ -1.96
DEPDC1-204ENST00000489862 SIPA1L3O60292 1781 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SCN11AQ9UI33 1791 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SNED1Q8TER0 1413 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MAP3K5Q99683 1374 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 TUBGCP6Q96RT7 1819 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 UMODL1Q5DID0 1318 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 IGLV5-37A0A075B6J1 123 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SAA2-SAA4A0A096LPE2 208 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MED19A0JLT2 244 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PRSS37A4D1T9 235 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 YJEFN3A6XGL0 299 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 IQCF5A8MTL0 148 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 C2CD4DB7Z1M9 353 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 E9PQ18 207 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PSMD11O00231 422 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 TRAFD1O14545 582 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 LSM1O15116 133 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SCAMP2O15127 329 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 YKT6O15498 198 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 P2RX6O15547 441 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 LCMT2O60294 686 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RANBP6O60518 1105 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 KRT36O76013 467 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 NXPH2O95156 264 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 TSPAN12O95859 305 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MBP02144 154 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 IGF1P05019 195 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SERPINF2P08697 491 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CCDC172P0C7W6 258 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 STAG3L2P0CL84 134 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF3P17036 446 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 LHCGRP22888 699 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MMP11P24347 488 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ACKR3P25106 362 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MMP12P39900 470 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RIPK4P57078 832 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RAB11AP62491 216 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 NOP14P78316 857 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 OTUD4Q01804 1114 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ASPHQ12797 758 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ILF3Q12906 894 aaKnown RBP eCLIP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SNTA1Q13424 505 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PEX6Q13608 980 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ZRSR1Q15695 479 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RAB11BQ15907 218 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 AANATQ16613 207 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 KRTAP13-3Q3SY46 172 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 LRRC37A5PQ49AS3 106 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SLC27A4Q6P1M0 643 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF790Q6PG37 636 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RHBDF2Q6PJF5 856 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 C6orf89Q6UWU4 347 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF562Q6V9R5 426 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CYP4V2Q6ZWL3 525 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CENPUQ71F23 418 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 ZNF771Q7L3S4 317 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 GOLGA7Q7Z5G4 137 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SERPINA9Q86WD7 417 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 GPR137CQ8N3F9 429 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PQLC3Q8N755 202 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 TMEM99Q8N816 258 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 OR5AU1Q8NGC0 362 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 OR4D5Q8NGN0 318 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 M1APQ8TC57 530 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CD300LFQ8TDQ1 290 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 GPX8Q8TED1 209 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 U2AF1L4Q8WU68 220 aaKnown RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CCDC107Q8WV48 283 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PIK3R3Q92569 461 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 C18orf25Q96B23 403 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 C8orf76Q96K31 380 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 FAM210AQ96ND0 272 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 CATSPER2Q96P56 530 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms