RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	RPP38	P78345	283 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MRPS22	P82650	360 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CBX1	P83916	185 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MXRA7	P84157	204 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	MGAT2	Q10469	447 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF155	Q12901	538 aa	Predicted RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PRSS53	Q2L4Q9	553 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ATAD3B	Q5T9A4	648 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF585A	Q6P3V2	769 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	OPN5	Q6U736	354 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CLECL1	Q8IZS7	167 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SLC15A4	Q8N697	577 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CDRT4	Q8N9R6	151 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	OR7G2	Q8NG99	324 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	OR9I1	Q8NGQ6	314 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	C16orf52	Q8NHV5	167 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SFXN5	Q8TD22	340 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	GPR151	Q8TDV0	419 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ASB15	Q8WXK1	588 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SLC9A6	Q92581	669 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	JADE3	Q92613	823 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CTHRC1	Q96CG8	243 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	HSPBAP1	Q96EW2	488 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	LCOR	Q96JN0	433 aa	Predicted RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CCDC115	Q96NT0	180 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	SH3GL1	Q99961	368 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	GPATCH1	Q9BRR8	931 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	NMUR2	Q9GZQ4	415 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CXXC4	Q9H2H0	198 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	LIN28A	Q9H9Z2	209 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520		Q9N2J8	555 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	EQTN	Q9NQ60	294 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PNPLA3	Q9NST1	481 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	EXD2	Q9NVH0	621 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ST6GALNAC2	Q9UJ37	374 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PPIE	Q9UNP9	301 aa	Known RBP	7.99	□□□□□ -1.13
USP4-213	ENST00000488520	ERVK-11	Q9UQG0	969 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	PLEKHA6	Q9Y2H5	1048 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	CLDN16	Q9Y5I7	305 aa		7.99	□□□□□ -1.13
USP4-213	ENST00000488520	RNF103-CHMP3	A0A140T963	221 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TMEM200C	A6NKL6	621 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	BBIP1	A8MTZ0	92 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520		G3V3Y1	287 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	HRK	O00198	91 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	UPK1A	O00322	258 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TP53I11	O14683	189 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ITGA10	O75578	1167 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	REM1	O75628	298 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	AGR2	O95994	175 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	NPPA	P01160	153 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	IGKV3-11	P04433	115 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	CELA3A	P09093	270 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	COX4I1	P13073	169 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	S1PR1	P21453	382 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	DRD5	P21918	477 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GABRA3	P34903	492 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TRHR	P34981	398 aa	Predicted RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ZFP36L2	P47974	494 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TMED10	P49755	219 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	CLK3	P49761	638 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	CDK9	P50750	372 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GPR143	P51810	404 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GP2	P55259	537 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	WNT3	P56703	355 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	PPIA	P62937	165 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TXNL4A	P83876	142 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	PLGLB1	Q02325	96 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	DUSP2	Q05923	314 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	NFYC	Q13952	458 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	RCAN2	Q14206	197 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	DECR1	Q16698	335 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	MPEG1	Q2M385	716 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GXYLT1	Q4G148	440 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	PIGG	Q5H8A4	983 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ARHGAP11A	Q6P4F7	1023 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	SLC2A7	Q6PXP3	512 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	TMEM64	Q6YI46	380 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	C16orf47	Q6ZP98	133 aa	Predicted RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GK5	Q6ZS86	529 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	LIX1L	Q8IVB5	337 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	FUNDC1	Q8IVP5	155 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	SLC44A2	Q8IWA5	706 aa	Predicted RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	OR2L13	Q8N349	312 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF321P	Q8N8H1	164 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ZNF615	Q8N8J6	731 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ZFP62	Q8NB50	900 aa	Predicted RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	APCDD1L	Q8NCL9	501 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	OR5AK3P	Q8NH89	298 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	GOT1L1	Q8NHS2	421 aa	Predicted RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	NUBPL	Q8TB37	319 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	FAM120B	Q96EK7	910 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	SLC35G5	Q96KT7	338 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	MS4A4E	Q96PG1	132 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	SMR3A	Q99954	134 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	SLC35A5	Q9BS91	424 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	YIPF4	Q9BSR8	244 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	THUMPD3	Q9BV44	507 aa	Known RBP	7.98	□□□□□ -1.13
USP4-213	ENST00000488520	CCDC106	Q9BWC9	280 aa		7.98	□□□□□ -1.13
USP4-213	ENST00000488520	ACTRT3	Q9BYD9	372 aa		7.98	□□□□□ -1.13

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms