RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PLGP00747 810 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 DANCRP0C864 163 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 ATP5F1P24539 256 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 LCN1P31025 176 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 IDUAP35475 653 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 EIF1AXP47813 144 aaKnown RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 HTR6P50406 440 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 SLC18A1P54219 525 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 RPS4XP62701 263 aaKnown RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 LCP2Q13094 533 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 HSP90B2PQ58FF3 399 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 CPTPQ5TA50 214 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 AGBL2Q5U5Z8 902 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 FAM219BQ5XKK7 198 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 TMEM107Q6UX40 140 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 DNM1P46Q6ZS02 220 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 ESPNLQ6ZVH7 1005 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 STEAP2Q8NFT2 490 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 OR2W6PQ8NHA6 318 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 MZB1Q8WU39 189 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 AKAP1Q92667 903 aaKnown RBP eCLIP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 ZBTB8AQ96BR9 441 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 TRMT61AQ96FX7 289 aaKnown RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 ZNF764Q96H86 408 aaPredicted RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 APOPT1Q96IL0 206 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 METTL2AQ96IZ6 378 aaKnown RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 TMEM237Q96Q45 408 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 GRIP2Q9C0E4 1043 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 GP6Q9HCN6 339 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 MYNNQ9NPC7 610 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 DDX18Q9NVP1 670 aaKnown RBP11.63□□□□□ -0.55
HDAC6-227ENST00000485102 NTMQ9P121 344 aa11.63□□□□□ -0.55
HDAC6-227ENST00000485102 CR1P17927 2039 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 HMGB1P1B2RPK0 211 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-227ENST00000485102 NKX2-2O95096 273 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 KCNH1O95259 989 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 PABPC4LP0CB38 370 aaKnown RBP11.62□□□□□ -0.55
HDAC6-227ENST00000485102 NTSP30990 170 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 GABRA3P34903 492 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 DMTNQ08495 405 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 CLEC12BQ2HXU8 276 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 IKBIPQ70UQ0 350 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 TRIM46Q7Z4K8 759 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 GALNT10Q86SR1 603 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 HIPK1Q86Z02 1210 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 CCDC63Q8NA47 563 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 OR2V1Q8NHB1 315 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 LILRB1Q8NHL6 650 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-227ENST00000485102 FAM110BQ8TC76 370 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 REPIN1Q9BWE0 567 aaKnown RBP11.62□□□□□ -0.55
HDAC6-227ENST00000485102 REG4Q9BYZ8 158 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 LRTM1Q9HBL6 345 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 MIEF1Q9NQG6 463 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 TMEM216Q9P0N5 145 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 LAMP3Q9UQV4 416 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 SNX8Q9Y5X2 465 aa11.62□□□□□ -0.55
HDAC6-227ENST00000485102 CUBNO60494 3623 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 NPIPB8E9PQR5 432 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 NDUFB5O43674 189 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 CXCL13O43927 109 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 GCM2O75603 506 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-227ENST00000485102 SYNGR4O95473 234 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 IGKV1D-16P01601 117 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 MYL2P10916 166 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 AGTR1P30556 359 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 PLPPR5Q32ZL2 321 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 GRAMD1BQ3KR37 738 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 VPS26BQ4G0F5 336 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 NCMAPQ5T1S8 102 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 PDSS1Q5T2R2 415 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 MFSD12Q6NUT3 480 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 PODNL1Q6PEZ8 512 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 WFDC8Q8IUA0 241 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 MISPQ8IVT2 679 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 GABRG1Q8N1C3 465 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 OR4C3Q8NH37 302 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 CEP70Q8NHQ1 597 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 EBPLQ9BY08 206 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 NGBQ9NPG2 151 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 MED4Q9NPJ6 270 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 NKIRAS1Q9NYS0 192 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 CLEC4AQ9UMR7 237 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 VDAC3Q9Y277 283 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 RNF115Q9Y4L5 304 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 TIMM22Q9Y584 194 aa11.61□□□□□ -0.55
HDAC6-227ENST00000485102 A0A0J9YW62 118 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 A0A1W2PQD3 144 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 A0A1W2PRB8 838 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 GXYLT2A0PJZ3 443 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 SHISA8B8ZZ34 492 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 RNF223E7ERA6 249 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 OXSR1O95747 527 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-227ENST00000485102 IFNA2P01563 188 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 SOD3P08294 240 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 PRPS2P11908 318 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 ADH6P28332 368 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 SERPINB5P36952 375 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 EIF1P41567 113 aaKnown RBP11.6□□□□□ -0.55
HDAC6-227ENST00000485102 BTKQ06187 659 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 RNPS1Q15287 305 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms