RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CD8BP10966 210 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 LAMP1P11279 417 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 FCGR2AP12318 317 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 ZNF17P17021 662 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 PRIM2P49643 509 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 ZNF41P51814 821 aaPredicted RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 VSNL1P62760 191 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 POU6F2P78424 691 aaPredicted RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 IFFO1Q0D2I5 559 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 CD226Q15762 336 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 R3HCC1LQ7Z5L2 792 aaKnown RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 GTPBP8Q8N3Z3 284 aaPredicted RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 RIBC1Q8N443 379 aaPredicted RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 OR10D3Q8NH80 312 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 TCP10LQ8TDR4 215 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 PPP3R2Q96LZ3 170 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 C3orf30Q96M34 536 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 KLHL4Q9C0H6 718 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 EML4Q9HC35 981 aaKnown RBP19.34■□□□□ 0.69
USP40-215ENST00000484528 UBQLN4Q9NRR5 601 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 GIN1Q9NXP7 522 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 ELOVL5Q9NYP7 299 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 ZNF226Q9NYT6 803 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 ATP6V1HQ9UI12 483 aa19.34■□□□□ 0.69
USP40-215ENST00000484528 FREM1Q5H8C1 2179 aa19.33■□□□□ 0.69
USP40-215ENST00000484528 A0A087WZY1 265 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 C16orf97H3BN30 126 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 SCDO00767 359 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 TNFSF11O14788 317 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 PLGP00747 810 aaPredicted RBP19.33■□□□□ 0.68
USP40-215ENST00000484528 CRYGSP22914 178 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 MAPK1P28482 360 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 TP53BP2Q13625 1128 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 CTU2Q2VPK5 515 aaKnown RBP19.33■□□□□ 0.68
USP40-215ENST00000484528 PLPPR5Q32ZL2 321 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 XKR7Q5GH72 579 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 EXOSC6Q5RKV6 272 aaKnown RBP19.33■□□□□ 0.68
USP40-215ENST00000484528 LRIG3Q6UXM1 1119 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 C22orf34Q6ZV56 151 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 KRTAP1-3Q8IUG1 177 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 WDR75Q8IWA0 830 aaKnown RBP19.33■□□□□ 0.68
USP40-215ENST00000484528 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.33■□□□□ 0.68
USP40-215ENST00000484528 ADGRG7Q96K78 797 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 BTBD2Q9BX70 525 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 UBTD1Q9HAC8 227 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 STOML1Q9UBI4 398 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 LGALS13Q9UHV8 139 aa19.33■□□□□ 0.68
USP40-215ENST00000484528 RAI1Q7Z5J4 1906 aaPredicted RBP19.33■□□□□ 0.68
USP40-215ENST00000484528 VPS13CQ709C8 3753 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 OIP5O43482 229 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 NUDT17P0C025 328 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 CREB1P16220 341 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 IL11P20809 199 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 PSMA4P25789 261 aaKnown RBP19.32■□□□□ 0.68
USP40-215ENST00000484528 HOXC12P31275 282 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 SERPINB4P48594 390 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 PCYT1AP49585 367 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 FGFBP1Q14512 234 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 ATP6AP1LQ52LC2 224 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 ZCCHC12Q6PEW1 402 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 KRTCAP2Q8N6L1 136 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 POC1BQ8TC44 478 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 ZBTB8AQ96BR9 441 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 HS3ST6Q96QI5 342 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 CXorf36Q9H7Y0 433 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 BEX4Q9NWD9 120 aaPredicted RBP19.32■□□□□ 0.68
USP40-215ENST00000484528 EMC9Q9Y3B6 208 aa19.32■□□□□ 0.68
USP40-215ENST00000484528 NSD1Q96L73 2696 aaPredicted RBP19.31■□□□□ 0.68
USP40-215ENST00000484528 A0A0J9YW62 118 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 C6orf47O95873 294 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 DDX5P17844 614 aaKnown RBP19.31■□□□□ 0.68
USP40-215ENST00000484528 CTBP2P56545 445 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 NKX6-1P78426 367 aaPredicted RBP19.31■□□□□ 0.68
USP40-215ENST00000484528 OCRLQ01968 901 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 ZNF117Q03924 483 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 MLC1Q15049 377 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 SPDYE7PQ495Y7 208 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 C6orf136Q5SQH8 315 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 CPTPQ5TA50 214 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 IL23RQ5VWK5 629 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 CXorf67Q86X51 503 aaPredicted RBP19.31■□□□□ 0.68
USP40-215ENST00000484528 FNDC5Q8NAU1 212 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 OR2V1Q8NHB1 315 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 B4GALNT2Q8NHY0 566 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 PHOSPHO1Q8TCT1 267 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 SMR3AQ99954 134 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 PIGUQ9H490 435 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 ZDHHC2Q9UIJ5 367 aa19.31■□□□□ 0.68
USP40-215ENST00000484528 MCTS1Q9ULC4 181 aaKnown RBP19.31■□□□□ 0.68
USP40-215ENST00000484528 TLN2Q9Y4G6 2542 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 C7orf72A4D263 438 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 SYNGR4O95473 234 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 ME2P23368 584 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 SHC1P29353 583 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 SFTPDP35247 375 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 RPL3P39023 403 aaKnown RBP19.3■□□□□ 0.68
USP40-215ENST00000484528 CCT3P49368 545 aaKnown RBP19.3■□□□□ 0.68
USP40-215ENST00000484528 RAC1P63000 192 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 FOXF1Q12946 379 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 HBMQ6B0K9 141 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms