RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SDHAF3Q9NRP4 125 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 TUBD1Q9UJT1 453 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 CLDN24A6NM45 220 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 ACOT8O14734 319 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 NME2P1O60361 137 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 TPST1O60507 370 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 CIB2O75838 187 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SNX4O95219 450 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SERPINA1P01009 418 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 CSTAP01040 98 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 NID1P14543 1247 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 NQO1P15559 274 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 ENDOUP21128 410 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 NME2P22392 152 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 PRKAR1BP31321 381 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 ADH7P40394 386 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 DNASE1L1P49184 302 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 CRYBA2P53672 197 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 GAS1P54826 345 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 GPR85P60893 370 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 EEF1A1P68104 462 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 CD226Q15762 336 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 MRPL2Q5T653 305 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 FNDC7Q5VTL7 733 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 DHRS4L2Q6PKH6 230 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 ZNF836Q6ZNA1 936 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 EIF3MQ7L2H7 374 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 GALNTL5Q7Z4T8 443 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SPPL2CQ8IUH8 684 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 MISPQ8IVT2 679 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 CMIPQ8IY22 773 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 CLIP4Q8N3C7 705 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 RBMXL3Q8N7X1 1067 aaKnown RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 EXD3Q8N9H8 876 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 TMEM178AQ8NBL3 297 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 BHLHE22Q8NFJ8 381 aaPredicted RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 DUSP19Q8WTR2 217 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 RASSF5Q8WWW0 418 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SCMH1Q96GD3 660 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 LRGUKQ96M69 825 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 RAB3IPQ96QF0 476 aaPredicted RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 PINK1Q9BXM7 581 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 RSPO3Q9BXY4 272 aaPredicted RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 MFRPQ9BY79 579 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 ARMC7Q9H6L4 198 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 DEPPQ9NTK1 212 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 ADPRHL2Q9NX46 363 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 RPS6KA6Q9UK32 745 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SLC13A4Q9UKG4 626 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 POMPQ9Y244 141 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 SLC35A3Q9Y2D2 325 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 KLF13Q9Y2Y9 288 aaPredicted RBP11.19□□□□□ -0.62
SDC1-206ENST00000482879 WIF1Q9Y5W5 379 aa11.19□□□□□ -0.62
SDC1-206ENST00000482879 NCKAP5O14513 1909 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 A0A0G2JMM0 328 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 A0A1W2PPB8 328 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 A0A1W2PRS3 328 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 C17orf51A8MQB3 221 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 KIR3DP1A8MWS1 328 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ANKRD65E5RJM6 399 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 KLRC4-KLRK1H3BQV0 150 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ADAM10O14672 748 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 GNB5O14775 395 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 SUV39H1O43463 412 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 PEX1O43933 1283 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CYP7B1O75881 506 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ZNF682O95780 498 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 UBL4AP11441 157 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CD247P20963 164 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ATP6V1B2P21281 511 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 KCNJ5P48544 419 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 MASP1P48740 699 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 SELENOWP63302 87 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 C17orf67Q0P5P2 114 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ELOAQ14241 798 aaKnown RBP11.18□□□□□ -0.62
SDC1-206ENST00000482879 FLOT2Q14254 428 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ZNF169Q14929 603 aaPredicted RBP11.18□□□□□ -0.62
SDC1-206ENST00000482879 DUSP7Q16829 419 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 ZSWIM7Q19AV6 140 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 GLIPR1L2Q4G1C9 344 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 EIPR1Q53HC9 387 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 RNF220Q5VTB9 566 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 C1orf146Q5VVC0 180 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 OR5M10Q6IEU7 315 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 LCN8Q6JVE9 175 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 Q6ZS92 163 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CBLL1Q75N03 491 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 SULF2Q8IWU5 870 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 EID3Q8N140 333 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 OR2M7Q8NG81 312 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 GPR32P1Q8NGA4 272 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 OR52E4Q8NGH9 312 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 OR10Q1Q8NGQ4 319 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 LZICQ8WZA0 190 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CNOT9Q92600 299 aaKnown RBP11.18□□□□□ -0.62
SDC1-206ENST00000482879 NTNG2Q96CW9 530 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 TPD52L3Q96J77 140 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 JSRP1Q96MG2 331 aaPredicted RBP11.18□□□□□ -0.62
SDC1-206ENST00000482879 RNF145Q96MT1 663 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms