RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 UBXN7O94888 489 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 GDNFP39905 211 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 EIF1AXP47813 144 aaKnown RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 GPR155Q7Z3F1 870 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 TMC8Q8IU68 726 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 ISG20Q96AZ6 181 aaKnown RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 GAL3ST4Q96RP7 486 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 BCL2L14Q9BZR8 327 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 EXO1Q9UQ84 846 aaKnown RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 NTNG1Q9Y2I2 539 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 ANTXRLA6NF34 631 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 LEFTY2O00292 366 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 IGLV3-25P01717 112 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 CD2P06729 351 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 SSX6Q7RTT6 188 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 BHLHA9Q7RTU4 235 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 DCUN1D3Q8IWE4 304 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 SEC22AQ96IW7 307 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 DCLRE1CQ96SD1 692 aaKnown RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 SLC6A7Q99884 636 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 C1QTNF3Q9BXJ4 246 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 ATG5Q9H1Y0 275 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 MKKSQ9NPJ1 570 aaPredicted RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 PHPT1Q9NRX4 125 aaPredicted RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 F8W036 122 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 CD6P30203 668 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 GUCA1AP43080 201 aaPredicted RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 XCR1P46094 333 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 TAS2R38P59533 333 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 BLOC1S1P78537 153 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 DGCR2P98153 550 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 CLPPQ16740 277 aaPredicted RBP12.69□□□□□ -0.38
USP42-206ENST00000479544 LAIR2Q6ISS4 152 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 TCTN3Q6NUS6 607 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 ZER1Q7Z7L7 766 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 L3MBTL4Q8NA19 623 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 OR56A1Q8NGH5 318 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 OR9A2Q8NGT5 310 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 ARPC5LQ9BPX5 153 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 GABARAPL3Q9BY60 117 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 CHST2Q9Y4C5 530 aa12.69□□□□□ -0.38
USP42-206ENST00000479544 EIF1AYO14602 144 aaKnown RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 SLC16A5O15375 505 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 KLK8O60259 260 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 FURINP09958 794 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ZNF30P17039 623 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 CMPK1P30085 196 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 SORDQ00796 357 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 MINDY4Q4G0A6 757 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 BTN2A1Q7KYR7 527 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 THAP4Q8WY91 577 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 GHSRQ92847 366 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 IFT46Q9NQC8 304 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 UPB1Q9UBR1 384 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 DIMT1Q9UNQ2 313 aaKnown RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 DOCK5Q9H7D0 1870 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 SLC22A31A6NKX4 558 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ZAR1LA6NP61 321 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TRIM23P36406 574 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 MC2RQ01718 297 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 BCL2A1Q16548 175 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 SFXN4Q6P4A7 337 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 GPALPP1Q8IXQ4 340 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 RASGEF1AQ8N9B8 481 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ZSCAN1Q8NBB4 408 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 KREMEN2Q8NCW0 462 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 OR13C5Q8NGS8 318 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 OR2M2Q96R28 347 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 PITX2Q99697 317 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 OR52D1Q9H346 318 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 KLHL9Q9P2J3 617 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 INSL5Q9Y5Q6 135 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 RAF1P04049 648 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 GABRA3P34903 492 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 AIMP2Q13155 320 aaKnown RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 HTR4Q13639 388 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 FAM76BQ5HYJ3 339 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TMEM173Q86WV6 379 aaPredicted RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 CALHM3Q86XJ0 350 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ADGRF3Q8IZF5 1079 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 CCDC107Q8WV48 283 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 METTL8Q9H825 291 aaKnown RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 MCCC2Q9HCC0 563 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 URADA6NGE7 173 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ERVH48-1M5A8F1 160 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TAS2R43P59537 309 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 EIPR1Q53HC9 387 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 METTL11BQ5VVY1 283 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TMPRSS9Q7Z410 1059 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 LRRTM4Q86VH4 590 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TMEM17Q86X19 198 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 RELL2Q8NC24 303 aaPredicted RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 DUSP19Q8WTR2 217 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 ZNF689Q96CS4 500 aaPredicted RBP12.68□□□□□ -0.38
USP42-206ENST00000479544 FOXN4Q96NZ1 517 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 TMEM43Q9BTV4 400 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 SCP2D1Q9UJQ7 156 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 CLEC4EQ9ULY5 219 aa12.68□□□□□ -0.38
USP42-206ENST00000479544 IGLV3-10A0A075B6K4 115 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 MMP12P39900 470 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms