RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 RABGAP1LQ5R372 815 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 MPP7Q5T2T1 576 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 SEL1L3Q68CR1 1132 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 HPS6Q86YV9 775 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 LRRC49Q8IUZ0 686 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 KLHL7Q8IXQ5 586 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 PQLC3Q8N755 202 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 PRELID2Q8N945 189 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 NAT8LQ8N9F0 302 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 ROBO4Q8WZ75 1007 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 TSACCQ96A04 125 aaPredicted RBP4.35□□□□□ -1.71
CCDC39-202ENST00000471307 MAGOHBQ96A72 148 aaKnown RBP4.35□□□□□ -1.71
CCDC39-202ENST00000471307 HAUS1Q96CS2 278 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 OTUB2Q96DC9 234 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 CABS1Q96KC9 395 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 PRMT1Q99873 361 aaKnown RBP4.35□□□□□ -1.71
CCDC39-202ENST00000471307 MGME1Q9BQP7 344 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 PCYOX1Q9UHG3 505 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 LEF1Q9UJU2 399 aaPredicted RBP4.35□□□□□ -1.71
CCDC39-202ENST00000471307 LIPT1Q9Y234 373 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 MTF2Q9Y483 593 aaPredicted RBP4.35□□□□□ -1.71
CCDC39-202ENST00000471307 CPQQ9Y646 472 aa4.35□□□□□ -1.71
CCDC39-202ENST00000471307 C2orf16Q68DN1 1984 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 IGLV4-3A0A075B6K6 122 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 GOLGA6L7A0A1B0GV03 622 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 HACD1B0YJ81 288 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 F5H5T6 163 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 MCF2LO15068 1137 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 PGRMC2O15173 223 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 CLDN11O75508 207 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ACSL3O95573 720 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 PENKP01210 267 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 IGKV3-15P01624 115 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 HPDP32754 393 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 COILP38432 576 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ETV5P41161 510 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 NDST2P52849 883 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 VCPP55072 806 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 CDH4P55283 916 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 YBEYP58557 167 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 EIF3EP60228 445 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 DYNLT1P63172 113 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 OTUD4Q01804 1114 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ZNF33AQ06730 810 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RASGEF1BQ0VAM2 473 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ILF2Q12905 390 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RCN2Q14257 317 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 PDK1Q15118 436 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 MPPE1Q53F39 396 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RWDD4Q6NW29 188 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 CCDC137Q6PK04 289 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 C4orf22Q6V702 233 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 LINC00696Q6ZRV3 163 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RBPMS2Q6ZRY4 209 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 SPATA21Q7Z572 469 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 SETD3Q86TU7 594 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 HOOK3Q86VS8 718 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 NLRP14Q86W24 1093 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ZNF683Q8IZ20 524 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 UMODL1-AS1Q8N2C9 162 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ZNF619Q8N2I2 560 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RTL3Q8N8U3 475 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ZNF557Q8N988 423 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ITFG1Q8TB96 612 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ACTL9Q8TC94 416 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 C1orf54Q8WWF1 131 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 FGF13Q92913 245 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 SMARCD2Q92925 531 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 PTP4A1Q93096 173 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 TMA16Q96EY4 203 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 RPRD1AQ96P16 312 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 CDX2Q99626 313 aaPredicted RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 ZYG11BQ9C0D3 744 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 EGLN3Q9H6Z9 239 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 DNAJC4Q9NNZ3 241 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 MID1IP1Q9NPA3 183 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 IL36AQ9UHA7 158 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 XPO7Q9UIA9 1087 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 CDH7Q9ULB5 785 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 VANGL2Q9ULK5 521 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 HEY1Q9Y5J3 304 aa4.34□□□□□ -1.71
CCDC39-202ENST00000471307 HELZP42694 1942 aaKnown RBP4.34□□□□□ -1.71
CCDC39-202ENST00000471307 REV3LO60673 3130 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 DOCK8Q8NF50 2099 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 MYOFQ9NZM1 2061 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 NUP210Q8TEM1 1887 aaPredicted RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CXorf51AA0A1B0GTR3 108 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ILVBLA1L0T0 632 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 BCLAF3A2AJT9 711 aaKnown RBP4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ARHGAP42A6NI28 874 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 ANXA2P2A6NMY6 339 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 H7C0C1 242 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 TBL1XO60907 577 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 PRAMEF12O95522 483 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 GAS8O95995 478 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 CCNCP24863 283 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 EDNRAP25101 427 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 OR1E1P30953 314 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 MC5RP33032 325 aa4.33□□□□□ -1.72
CCDC39-202ENST00000471307 SOAT1P35610 550 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms