RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SNX6Q9UNH7 406 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 GAB2Q9UQC2 676 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CHMP2BQ9UQN3 213 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 WDR37Q9Y2I8 494 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 OR1A2Q9Y585 309 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FER1L6Q2WGJ9 1857 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 LOXHD1Q8IVV2 1947 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FAM47DPA6NHR8 397 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 YJEFN3A6XGL0 299 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ALOX15BO15296 676 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ADAM12O43184 909 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 GMFGO60234 142 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CDH16O75309 829 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 LRCH4O75427 683 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 SAP30O75446 220 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 BANF1O75531 89 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 KRT33AO76009 404 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TSHBP01222 138 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 VTNP04004 478 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CD48P09326 243 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 IQCF3P0C7M6 154 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ZNF286BP0CG31 522 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CT45A8P0DMV1 189 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CT45A9P0DMV2 189 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CALCBP10092 127 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 RRASP10301 218 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 KDELR1P24390 212 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 MIPP30301 263 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 PHBP35232 272 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 RDXP35241 583 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 RPL22P35268 128 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 ACADSBP45954 432 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CCR4P51679 360 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 NDST1P52848 882 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 GSCP56915 257 aaPredicted RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 OR1D5P58170 312 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 DCDC1P59894 354 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 EIF3EP60228 445 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 BASP1P80723 227 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 IL9RQ01113 521 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 HSF2Q03933 536 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CNTN1Q12860 1018 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 GRB14Q14449 540 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TMEM132DQ14C87 1099 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 FASTKD3Q14CZ7 662 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 EFTUD2Q15029 972 aaKnown RBP eCLIP3.61□□□□□ -1.833e-9■■■□□ 18.5
VPS29-202ENST00000447578 KYAT1Q16773 422 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 GOLGA7BQ2TAP0 167 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 MPPE1Q53F39 396 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 CT45A2Q5DJT8 189 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ANKRD22Q5VYY1 191 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 RTL6Q6ICC9 239 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 SULT1C3Q6IMI6 304 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 SCYL2Q6P3W7 929 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 FAM183BPQ6ZVS7 135 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TRPM8Q7Z2W7 1104 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ZBED8Q8IZ13 594 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 OR6M1Q8NGM8 313 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 RXFP2Q8WXD0 754 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 SMPDL3AQ92484 453 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 P3H4Q92791 437 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 HPDLQ96IR7 371 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ZNF354BQ96LW1 612 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 MAGEB18Q96M61 343 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TGS1Q96RS0 853 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 PEBP4Q96S96 227 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 NKX3-1Q99801 234 aaPredicted RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 FICDQ9BVA6 458 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ZNF416Q9BWM5 594 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 NUSAP1Q9BXS6 441 aaKnown RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 CALN1Q9BXU9 219 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 NFKBIZQ9BYH8 718 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 FRMD8P1Q9BZ68 369 aaPredicted RBP3.61□□□□□ -1.83
VPS29-202ENST00000447578 MMP28Q9H239 520 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TRABDQ9H4I3 376 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ASB7Q9H672 318 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 ACTR8Q9H981 624 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 EPHA6Q9UF33 1036 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 GINS2Q9Y248 185 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 MFHAS1Q9Y4C4 1052 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 COL1A2P08123 1366 aa3.61□□□□□ -1.83
VPS29-202ENST00000447578 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FAM230AA0A1W2PPH8 454 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 ANKRD30BLA7E2S9 258 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 VGLL3A8MV65 326 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 H7C0C1 242 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 LGALS8O00214 317 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PDHXO00330 501 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 E2F3O00716 465 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 CHADO15335 359 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 OAS1P00973 400 aaKnown RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 NGFP01138 241 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GSTA1P08263 222 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 TNNI3P19429 210 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 TAC1P20366 129 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PAICSP22234 425 aaKnown RBP3.6□□□□□ -1.83
VPS29-202ENST00000447578 AADACP22760 399 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 GCAP28676 217 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 PRDX2P32119 198 aa3.6□□□□□ -1.83
VPS29-202ENST00000447578 FOXN2P32314 431 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms