RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 A0A1B0GVC2 190 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 EIF4E1BA6NMX2 242 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 EVPLLA8MZ36 301 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 NDUFAB1O14561 156 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 AIM2O14862 343 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 SLC28A2O43868 658 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 ZIC3O60481 467 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 HPNP05981 417 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 NR2F1P10589 423 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 EDN3P14138 238 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 ATP6V1C1P21283 382 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 MAGEA5P43359 124 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 PCBP3P57721 371 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 GPR68Q15743 365 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 MMEL1Q495T6 779 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 KRTCAP3Q53RY4 240 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 PDZK1Q5T2W1 519 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 GCNT6Q5T4J0 391 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 OR5M10Q6IEU7 315 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 PRICKLE2Q7Z3G6 844 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 SERPINA11Q86U17 422 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 SLC22A16Q86VW1 577 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 SLC15A3Q8IY34 581 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 ZZZ3Q8IYH5 903 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 METTL25Q8N6Q8 603 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 PCYOX1LQ8NBM8 494 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 GALNT11Q8NCW6 608 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 FAM71CQ8NEG0 241 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 OR1J4Q8NGS1 313 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 TBL1XR1Q9BZK7 514 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 OR2B2Q9GZK3 357 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 QRSL1Q9H0R6 528 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 DSN1Q9H410 356 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 MTHFD2LQ9H903 347 aaPredicted RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 EFCAB1Q9HAE3 211 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 AGPAT4Q9NRZ5 378 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 GID8Q9NWU2 228 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 GMPR2Q9P2T1 348 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 SUCOQ9UBS9 1254 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 TAGLN3Q9UI15 199 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 ICAM5Q9UMF0 924 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 MRPS18CQ9Y3D5 142 aaKnown RBP11.3□□□□□ -0.6
USP40-205ENST00000430158 MPDZO75970 2070 aa11.3□□□□□ -0.6
USP40-205ENST00000430158 A0A0G2JPF8 293 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 SERINC4A6NH21 518 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 HNRNPCL2B2RXH8 293 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 HNRNPCL3B7ZW38 293 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 NDUFB5O43674 189 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 HNRNPCL1O60812 293 aaKnown RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 CBR3O75828 277 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 PGM3O95394 542 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 BCHEP06276 602 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 HNRNPCL4P0DMR1 293 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 ENDOUP21128 410 aaKnown RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 PGM1P36871 562 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 RNF144AP50876 292 aaPredicted RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 CRYBA2P53672 197 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 B3GALT5-AS1P59052 145 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 CDK6Q00534 326 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 PLGLB1Q02325 96 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 C17orf67Q0P5P2 114 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 FGFBP1Q14512 234 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 ZNF630Q2M218 657 aaPredicted RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 TMEM44Q2T9K0 475 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 GPAT3Q53EU6 434 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 RPS26P11Q5JNZ5 115 aaPredicted RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 CBLN3Q6UW01 205 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 TRILQ7L0X0 811 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 MTERF4Q7Z6M4 381 aaKnown RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 HMGN2P46Q86SG4 172 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 GATSQ8NAP1 163 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 ST6GALNAC3Q8NDV1 305 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 OR10A6Q8NH74 314 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 NFKBIDQ8NI38 313 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 JSRP1Q96MG2 331 aaPredicted RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 THUMPD3Q9BV44 507 aaKnown RBP11.29□□□□□ -0.6
USP40-205ENST00000430158 DEFB127Q9H1M4 99 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 SDHAF3Q9NRP4 125 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 MED11Q9P086 117 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 ABCD2Q9UBJ2 740 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 USP22Q9UPT9 525 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 ZNF835Q9Y2P0 537 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 L3MBTL1Q9Y468 752 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 TENM4Q6N022 2769 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 DOPEY1Q5JWR5 2465 aa11.29□□□□□ -0.6
USP40-205ENST00000430158 CLDN24A6NM45 220 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 ETV2O00321 342 aaPredicted RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 NME4O00746 187 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SCDO00767 359 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 TFECO14948 347 aaPredicted RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 ZNHIT1O43257 154 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 ADAM11O75078 769 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 WISP1O95388 367 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 EPPINO95925 133 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 PLA2G2AP14555 144 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SRD5A2P31213 254 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 CPOXP36551 454 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 CPA2P48052 419 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 MASP1P48740 699 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 CLK3P49761 638 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms