RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 CGB2Q6NT52 195 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 NIPAL3Q6P499 406 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 Q6ZR54 194 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 IFNEQ86WN2 208 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 CENPLQ8N0S6 344 aaPredicted RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 BPIFB2Q8N4F0 458 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 CSNK1A1LQ8N752 337 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 OR2T33Q8NG76 320 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 CNIH3Q8TBE1 160 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 TRUB1Q8WWH5 349 aaKnown RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 ADIPOR1Q96A54 375 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 VPS39Q96JC1 886 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 AKR1E2Q96JD6 320 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 THUMPD2Q9BTF0 503 aaKnown RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 TM2D1Q9BX74 207 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 DEFB126Q9BYW3 111 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 COMMD4Q9H0A8 199 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 POLR3FQ9H1D9 316 aaPredicted RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 SLC25A51Q9H1U9 297 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 OPN3Q9H1Y3 402 aaPredicted RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 DHX33Q9H6R0 707 aaKnown RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 WDR76Q9H967 626 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 GPN2Q9H9Y4 310 aaPredicted RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 ZNF275Q9NSD4 429 aaPredicted RBP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 AGPAT5Q9NUQ2 364 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 DPM3Q9P2X0 92 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 GALPQ9UBC7 116 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 CRLS1Q9UJA2 301 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 TP53TG3Q9ULZ0 132 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 MFHAS1Q9Y4C4 1052 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 AP1M2Q9Y6Q5 423 aa1.84□□□□□ -2.11
PTPRC-208ENST00000427110 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.84□□□□□ -2.11
PTPRC-208ENST00000427110 TTC37Q6PGP7 1564 aa1.84□□□□□ -2.12
PTPRC-208ENST00000427110 NEURL4Q96JN8 1562 aa1.84□□□□□ -2.12
PTPRC-208ENST00000427110 ABCA9Q8IUA7 1624 aa1.84□□□□□ -2.12
PTPRC-208ENST00000427110 CCDC7Q96M83 1385 aa1.84□□□□□ -2.12
PTPRC-208ENST00000427110 RNF17Q9BXT8 1623 aaKnown RBP1.84□□□□□ -2.12
PTPRC-208ENST00000427110 EIF2AK4Q9P2K8 1649 aaKnown RBP1.84□□□□□ -2.12
PTPRC-208ENST00000427110 C9orf84Q5VXU9 1444 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ANKRD50Q9ULJ7 1429 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 SPHKAPQ2M3C7 1700 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 IFT172Q9UG01 1749 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 RALGAPBQ86X10 1494 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ABCC1P33527 1531 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DUOX2Q9NRD8 1548 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 FAM135AQ9P2D6 1515 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 KIF1BO60333 1816 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 IGHV3-35A0A0C4DH35 117 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 A0A1B0GUL7 405 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 A0A1W2PQ72 361 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 FAM168BA1KXE4 195 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 FRG2CA6NGY1 282 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 E9PLD3 99 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 SDHDO14521 159 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 TNFSF11O14788 317 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 HAT1O14929 419 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 MAPK13O15264 365 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DUX1O43812 170 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 LANCL1O43813 399 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 JAK2O60674 1132 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 RAMP1O60894 148 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 SMPD2O60906 423 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 TSC22D2O75157 780 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 TRIM3O75382 744 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 OR4F21O95013 312 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 HEXBP07686 556 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 CCDC166P0CW27 439 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 HSPA5P11021 654 aaKnown RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 BCKDHAP12694 445 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DESP17661 470 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 FASP25445 335 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 PSMA2P25787 234 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ADRA1AP35348 466 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DHPSP49366 369 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 KRTAP12-2P59991 146 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 RPS8P62241 208 aaKnown RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 KCNJ11Q14654 390 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DCAF4L1Q3SXM0 396 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 TEX44Q53QW1 395 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 PAGE2BQ5JRK9 111 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ZNF658Q5TYW1 1059 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 SLC22A10Q63ZE4 541 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ZNF57Q68EA5 555 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 SULT1C3Q6IMI6 304 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 PAMR1Q6UXH9 720 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 LANCL3Q6ZV70 420 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 GET4Q7L5D6 327 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 DPY19L4Q7Z388 723 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 LHFPL4Q7Z7J7 247 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ZNF573Q86YE8 665 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 GPR65Q8IYL9 337 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ZNF525Q8N782 197 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ZBTB44Q8NCP5 570 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 OR5AU1Q8NGC0 362 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 MRAPQ8TCY5 172 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 ADAMTS16Q8TE57 1224 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 C18orf25Q96B23 403 aaPredicted RBP1.83□□□□□ -2.12
PTPRC-208ENST00000427110 MAPKAP1Q9BPZ7 522 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 TMEM121Q9BTD3 319 aa1.83□□□□□ -2.12
PTPRC-208ENST00000427110 PAXXQ9BUH6 204 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms