RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 CDCA4Q9BXL8 241 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 OR52A5Q9H2C5 316 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ING3Q9NXR8 418 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ZNF346Q9UL40 294 aaKnown RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 MEIS3P1A6NDR6 274 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 C4orf51C9J302 202 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 K7EQS6 105 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 PPP1R3DO95685 299 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 GABRA3P34903 492 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 DRD3P35462 400 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 FGFBP1Q14512 234 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 TRAM2Q15035 370 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 PEX5LQ8IYB4 626 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 LAS2Q8IYD9 372 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 NRSN1Q8IZ57 195 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 SLC41A3Q96GZ6 507 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 HCAR1Q9BXC0 346 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 CD93Q9NPY3 652 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 V9GYH0 126 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 LRIT2A6NDA9 550 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 POM121BA6NF01 834 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 PRR23D1E9PI22 279 aaPredicted RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 E9PI62 339 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 CDC42EP2O14613 210 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 KLHL18O94889 574 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 NUDT14O95848 222 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 IFNA16P05015 189 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 MSL3P1P0C860 447 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 PRR23D2P0DMB1 279 aaPredicted RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 HOXB6P17509 224 aaKnown RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 ACVR2AP27037 513 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 KIR2DL1P43626 348 aaPredicted RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 PCBP3P57721 371 aaKnown RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 OR12D2P58182 307 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ANGPT1Q15389 498 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 VWA5B2Q8N398 1253 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ST6GAL2Q96JF0 529 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ORAI3Q9BRQ5 295 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 DPEP2Q9H4A9 486 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 ZNF576Q9H609 170 aa12.48□□□□□ -0.41
USP42-203ENST00000426246 CNOT2Q9NZN8 540 aaKnown RBP12.48□□□□□ -0.41
USP42-203ENST00000426246 BLOC1S5-TXNDC5H3BN57 136 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 PRODHO43272 600 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 AKAP8O43823 692 aaKnown RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 HLA-DPB1P04440 258 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 ACSL1P33121 698 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 EVI2BP34910 448 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 ZNF155Q12901 538 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 IRF4Q15306 451 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 HES5Q5TA89 166 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 BHLHB9Q6PI77 547 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 METAP1DQ6UB28 335 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SMRP1Q8NCR6 262 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 OR5K2Q8NHB8 316 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SLC7A6Q92536 515 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 CCDC120Q96HB5 630 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 BCL7BQ9BQE9 202 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 HDAC8Q9BY41 377 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 MOV10Q9HCE1 1003 aaKnown RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 C20orf141Q9NUB4 165 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 EIF3KQ9UBQ5 218 aaKnown RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 SHISA3A0PJX4 238 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 POLR1CO15160 346 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 LILRB5O75023 590 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 UBXN7O94888 489 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 MT-ND4P03905 459 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 ELK1P19419 428 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 BLVRAP53004 296 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SHC2P98077 582 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 PRDX1Q06830 199 aaKnown RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 MLLT11Q13015 90 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 TMEM52BQ4KMG9 183 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SIRT6Q8N6T7 355 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 OR4Q3Q8NH05 313 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SNX33Q8WV41 574 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 ZNF514Q96K75 400 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 ALG8Q9BVK2 526 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 GNG8Q9UK08 70 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 PPIEQ9UNP9 301 aaKnown RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 MTCH2Q9Y6C9 303 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 LANCL1O43813 399 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 TBXA2RP21731 343 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 RAB28P51157 221 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 GPLD1P80108 840 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 E2F1Q01094 437 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 RHAGQ02094 409 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 TFF2Q03403 129 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SQSTM1Q13501 440 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 HTR4Q13639 388 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 ITPRIPL2Q3MIP1 535 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 Q5BKY6 102 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 LRRC17Q8N6Y2 441 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 FANK1Q8TC84 345 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 SLC25A46Q96AG3 418 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 DPCDQ9BVM2 203 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 OR2B2Q9GZK3 357 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 B3GAT2Q9NPZ5 323 aa12.47□□□□□ -0.41
USP42-203ENST00000426246 PLEKHB1Q9UF11 243 aaPredicted RBP12.47□□□□□ -0.41
USP42-203ENST00000426246 OR10H1Q9Y4A9 318 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms