RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 NCMAPQ5T1S8 102 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 HEPHL1Q6MZM0 1159 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 TIFABQ6ZNK6 161 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 BEND4Q6ZU67 534 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 SZRD1Q7Z422 152 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 WDR75Q8IWA0 830 aaKnown RBP7.21□□□□□ -1.26
VIM-202ENST00000421459 SLC16A11Q8NCK7 471 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 ATP6V1C2Q8NEY4 427 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 NUP43Q8NFH3 380 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 CLHC1Q8NHS4 586 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 FAM110BQ8TC76 370 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 SMAP2Q8WU79 429 aaPredicted RBP7.21□□□□□ -1.26
VIM-202ENST00000421459 HTRA1Q92743 480 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 L3HYPDHQ96EM0 354 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 GIMAP5Q96F15 307 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 SLCO5A1Q9H2Y9 848 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 MYNNQ9NPC7 610 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 SIRT5Q9NXA8 310 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 GIN1Q9NXP7 522 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 TAS2R7Q9NYW3 318 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 BAIAP2L1Q9UHR4 511 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 MCTS1Q9ULC4 181 aaKnown RBP7.21□□□□□ -1.26
VIM-202ENST00000421459 GPR52Q9Y2T5 361 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 CCL27Q9Y4X3 112 aa7.21□□□□□ -1.26
VIM-202ENST00000421459 A0A087WUV0 522 aaPredicted RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 EXOC1LA0A1B0GW35 172 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 A0A1W2PPM1 405 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 SERTM1A2A2V5 107 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ZNF814B7Z6K7 855 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 G3V2L1 256 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 SEC22BO75396 215 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ENO1P06733 434 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 TUBBP07437 444 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 LINGO3P0C6S8 592 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ZNF17P17021 662 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 PSMB1P20618 241 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 ENPP1P22413 925 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 GPC1P35052 558 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 PSMD4P55036 377 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 C21orf58P58505 322 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 SRSF2Q01130 221 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 OCRLQ01968 901 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 BSPH1Q075Z2 132 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 FOXF1Q12946 379 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 SLC29A2Q14542 456 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 KIAA0040Q15053 153 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ZNF672Q499Z4 452 aaPredicted RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 GLE1Q53GS7 698 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 CLEC6AQ6EIG7 209 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ADAM5Q6NVV9 412 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 CBLN3Q6UW01 205 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 SEZ6L2Q6UXD5 910 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 TFAP2EQ6VUC0 442 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 ESPNLQ6ZVH7 1005 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 TRIM46Q7Z4K8 759 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 LILRA2Q8N149 483 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 GABRG1Q8N1C3 465 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 OR2T11Q8NH01 316 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 GTPBP3Q969Y2 492 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 KLHL15Q96M94 604 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 FMO2Q99518 471 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 TACO1Q9BSH4 297 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 TBK1Q9UHD2 729 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 PRSS50Q9UI38 385 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 MRTO4Q9UKD2 239 aaKnown RBP7.2□□□□□ -1.26
VIM-202ENST00000421459 GRID1Q9ULK0 1009 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 FIS1Q9Y3D6 152 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 RNF115Q9Y4L5 304 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 KCNE3Q9Y6H6 103 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 MXRA5Q9NR99 2828 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 COL6A5A8TX70 2615 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 PCNX3Q9H6A9 2034 aa7.2□□□□□ -1.26
VIM-202ENST00000421459 CSPG4Q6UVK1 2322 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 HIVEP2P31629 2446 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 IGHV4-30-2A0A087WSY4 118 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 A0A087WZY1 265 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 A0A1W2PNR3 127 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 ZNF195O14628 629 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 PDPK1O15530 556 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 LYZL6O75951 148 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 URI1O94763 535 aaPredicted RBP7.19□□□□□ -1.26
VIM-202ENST00000421459 CD3EP07766 207 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 IL32P24001 234 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 IDUAP35475 653 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 ZNF41P51814 821 aaPredicted RBP7.19□□□□□ -1.26
VIM-202ENST00000421459 MANFP55145 182 aaKnown RBP7.19□□□□□ -1.26
VIM-202ENST00000421459 ZNF117Q03924 483 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 STK11Q15831 433 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 ZNF239Q16600 458 aaKnown RBP7.19□□□□□ -1.26
VIM-202ENST00000421459 TMEM176BQ3YBM2 270 aaPredicted RBP7.19□□□□□ -1.26
VIM-202ENST00000421459 SFRP5Q5T4F7 317 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 LRIG3Q6UXM1 1119 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 Q6ZSR9 355 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 OLIG3Q7RTU3 272 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 STK32CQ86UX6 486 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 SLC22A9Q8IVM8 553 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 MMGT1Q8N4V1 131 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 BANPQ8N9N5 519 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 STEAP2Q8NFT2 490 aa7.19□□□□□ -1.26
VIM-202ENST00000421459 B4GALNT2Q8NHY0 566 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms