RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MR1Q95460 341 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NMNAT1Q9HAN9 279 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 BTNL2Q9UIR0 455 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SPO11Q9Y5K1 396 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SMAD9O15198 467 aaKnown RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 IL1R2P27930 398 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 CNR2P34972 360 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 TNFSF9P41273 254 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 RNF144AP50876 292 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 F2RL1P55085 397 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 GPR85P60893 370 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 TEKQ02763 1124 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 P2RY14Q15391 338 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 USP51Q70EK9 711 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 LRRTM4Q86VH4 590 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NKAIN3Q8N8D7 197 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NUS1Q96E22 293 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 DUS3LQ96G46 650 aaKnown RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ISYNA1Q9NPH2 558 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 DTYMKP23919 212 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 CRABP1P29762 137 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 P4HA3Q7Z4N8 544 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 RTP4Q96DX8 246 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SLC6A14Q9UN76 642 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 CD1DP15813 335 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 EFNA1P20827 205 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ARL2P36404 184 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 PXDC1Q5TGL8 231 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ALKAL2Q6UX46 152 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ADGRG5Q8IZF4 528 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 GCNT2Q8N0V5 402 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NPRL2Q8WTW4 380 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 MYADMQ96S97 322 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 GALPQ9UBC7 116 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 TBPP20226 339 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NDUFA6P56556 154 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ACTR1AP61163 376 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 PDLIM3Q53GG5 364 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 FAM117BQ6P1L5 589 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 FBXO15Q8NCQ5 510 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 IL17RDQ8NFM7 739 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SLC2A6Q9UGQ3 507 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 C1orf226A1L170 272 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ANKRD28O15084 1053 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 KCNJ5P48544 419 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 RPS13P62277 151 aaKnown RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ENDOGQ14249 297 aaKnown RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ACOT6Q3I5F7 207 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 FIGNL1Q6PIW4 674 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 DHRS4L2Q6PKH6 230 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 AGTRAPQ6RW13 159 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SLC39A7Q92504 469 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 LMLNQ96KR4 655 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 CD300LBA8K4G0 201 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SNHG28P0DPA3 235 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 C5AR1P21730 350 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 SSTR2P30874 369 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF620Q6ZNG0 422 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 OR9A1PQ8NGU1 263 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 PSMG2Q969U7 264 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 CMTM3Q96MX0 182 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 LMAN1LQ9HAT1 526 aa12.2□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF629Q9UEG4 869 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-206ENST00000409809 NPIPA5A0A0B4J1W7 369 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ARNTLO00327 626 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SLC16A6O15403 523 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 KCNJ13O60928 360 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 C6P13671 934 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SLC25A46Q96AG3 418 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 NEMP2A6NFY4 417 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 FAM166BA8MTA8 275 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 CPZQ66K79 652 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 CRLF2Q9HC73 371 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 TESQ9UGI8 421 aaKnown RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 PCDHA2Q9Y5H9 948 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MAS1P04201 325 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 FZD3Q9NPG1 666 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SLX4Q8IY92 1834 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ASCC3Q8N3C0 2202 aaKnown RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MPC1LP0DKB6 136 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 C1GALT1C1LP0DN25 315 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MSS51Q4VC12 460 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ABHD15Q6UXT9 468 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 RHOUQ7L0Q8 258 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SPNS1Q9H2V7 528 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ACKR4Q9NPB9 350 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 NPFFR2Q9Y5X5 522 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 NME4O00746 187 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 TRAF3IP2O43734 574 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MGMTP16455 207 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 RAB13P51153 203 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 REEP5Q00765 189 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ACOT7LQ6ZUV0 252 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MAMDC2Q7Z304 686 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 FAM129CQ86XR2 697 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 OR56B1Q8NGI3 324 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 AKR7LQ8NHP1 331 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MCCC2Q9HCC0 563 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 TDP1Q9NUW8 608 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms