RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FZD3Q9NPG1 666 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 SDHAF2Q9NX18 166 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 MYOFQ9NZM1 2061 aa11.21□□□□□ -0.62
HMGB1-206ENST00000405805 OR10H2O60403 315 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SCG5P05408 212 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MMP11P24347 488 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ACSL1P33121 698 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MC3RP41968 323 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SOX9P48436 509 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 WDR5P61964 334 aaKnown RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 OC90Q02509 493 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ST3GAL3Q11203 375 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 KCNC3Q14003 757 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 C2orf27AQ580R0 203 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 C6orf132Q5T0Z8 1188 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 PARS2Q7L3T8 475 aaKnown RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 CHTF18Q8WVB6 975 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ACOT12Q8WYK0 555 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 UCN3Q969E3 161 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 GSX2Q9BZM3 304 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 THSD1Q9NS62 852 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 PRELID3BQ9Y3B1 194 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 IGLON5A6NGN9 336 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MPIP34949 423 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MAP2K6P52564 334 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 STXBP1P61764 594 aaKnown RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 DEFB134Q4QY38 66 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 TMEFF1Q8IYR6 380 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 CD300LFQ8TDQ1 290 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 TM9SF4Q92544 642 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 LRRC46Q96FV0 321 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 C1GALT1Q9NS00 363 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 GFYI3L273 518 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF254O75437 659 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 CD79BP40259 229 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 XCR1P46094 333 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 GZMKP49863 264 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 AANATQ16613 207 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 GGTA1PQ4G0N0 100 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 UNC5DQ6UXZ4 953 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 TCEAL8Q8IYN2 117 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 PROKR2Q8NFJ6 384 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 OR52I1Q8NGK6 324 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 LCN9Q8WX39 176 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 KCNN2Q9H2S1 579 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 UNKLQ9H9P5 680 aaKnown RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ASF1BQ9NVP2 202 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 FBXL12Q9NXK8 326 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 WSB2Q9NYS7 404 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 TAAR2Q9P1P5 351 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RGPD3A6NKT7 1758 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 LOC285556D6RIA3 1793 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RGPD4Q7Z3J3 1758 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 TRBV23-1A0A0A0MS06 115 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RIIAD1A6NNX1 92 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MAGEB4O15481 346 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SCGNO76038 276 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SLC2A10O95528 541 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 FAM27D1Q5T7N8 215 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RAB11FIP2Q7L804 512 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SLC9B2Q86UD5 537 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 DCUN1D3Q8IWE4 304 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 REM2Q8IYK8 340 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 WDR20Q8TBZ3 569 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 ZFPM2Q8WW38 1151 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 RFT1Q96AA3 541 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 C3orf49Q96BT1 292 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 OTUB2Q96DC9 234 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 CXorf40BQ96DE9 158 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 VN1R3Q9BXE9 311 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 BRF2Q9HAW0 419 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 OR2S2Q9NQN1 319 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 SLC22A11Q9NSA0 550 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 NLGN3Q9NZ94 848 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 USP36Q9P275 1121 aaKnown RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 GPN3Q9UHW5 284 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-206ENST00000405805 MAFFQ9ULX9 164 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 PLEKHA6Q9Y2H5 1048 aa11.2□□□□□ -0.62
HMGB1-206ENST00000405805 KRBOX1C9JBD0 128 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF670-ZNF695F2Z2N8 137 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 CDC123O75794 336 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 RHOP08100 348 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PCP4P48539 62 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 COX18Q8N8Q8 333 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 NUP43Q8NFH3 380 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 OR9A2Q8NGT5 310 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 OR2A14Q96R47 310 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 CNOT2Q9NZN8 540 aaKnown RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF705GA8MUZ8 300 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 HIDE1A8MVS5 230 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 C1QTNF3-AMACRE9PGA6 284 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 F5H0A9 414 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 SOCS6O14544 535 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 SCO2O43819 266 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 HBQ1P09105 142 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 SRP9P49458 86 aaKnown RBP11.19□□□□□ -0.62
HMGB1-206ENST00000405805 PPP3R1P63098 170 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 TRAM2Q15035 370 aa11.19□□□□□ -0.62
HMGB1-206ENST00000405805 ASTLQ6HA08 431 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms