RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NDUFA9Q16795 377 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 SERPINA12Q8IW75 414 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 OR5W2Q8NH69 310 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 SETD7Q8WTS6 366 aaKnown RBP19.54■□□□□ 0.72
CTCF-202ENST00000401394 SLC41A3Q96GZ6 507 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 OR51J1Q9H342 316 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 BABAM2Q9NXR7 383 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 ELF5Q9UKW6 265 aaPredicted RBP19.54■□□□□ 0.72
CTCF-202ENST00000401394 PPIEQ9UNP9 301 aaKnown RBP19.54■□□□□ 0.72
CTCF-202ENST00000401394 GON4LQ3T8J9 2241 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 CACNA1IQ9P0X4 2223 aa19.54■□□□□ 0.72
CTCF-202ENST00000401394 H3BSH0 61 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 PSMD9O00233 223 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 IMPA2O14732 288 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 FZD7O75084 574 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 RGS9O75916 674 aaPredicted RBP19.53■□□□□ 0.72
CTCF-202ENST00000401394 GSTM3P21266 225 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 RFX3P48380 749 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 KHKP50053 298 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 EXOSC2Q13868 293 aaKnown RBP19.53■□□□□ 0.72
CTCF-202ENST00000401394 GPR68Q15743 365 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 MLF2Q15773 248 aaPredicted RBP19.53■□□□□ 0.72
CTCF-202ENST00000401394 KANSL1Q7Z3B3 1105 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 MRGPREQ86SM8 312 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 DCUN1D3Q8IWE4 304 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 FBXL6Q8N531 539 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 ACOT4Q8N9L9 421 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 NUP43Q8NFH3 380 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 OR51A7Q8NH64 312 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 LRRC20Q8TCA0 184 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 CDS1Q92903 461 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 PTP4A1Q93096 173 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 SLC35A4Q96G79 324 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 PEX11GQ96HA9 241 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 C4orf36Q96KX1 117 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 FERD3LQ96RJ6 166 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 EIF3KQ9UBQ5 218 aaKnown RBP19.53■□□□□ 0.72
CTCF-202ENST00000401394 TRAV27A0A087WT01 109 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 A0A0G2JK05 382 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 EFCAB14O75071 495 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 ADGRD2Q7Z7M1 963 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 PIAS4Q8N2W9 510 aaPredicted RBP19.53■□□□□ 0.72
CTCF-202ENST00000401394 ZNF527Q8NB42 609 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 HHIPL1Q96JK4 782 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 BTBD1Q9H0C5 482 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 IL20Q9NYY1 176 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 DAPL1A0PJW8 107 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 IGHA1P01876 353 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 HTR1FP30939 366 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 VIPR2P41587 438 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 WASP42768 502 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 CHMP1BQ7LBR1 199 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 C16orf62Q7Z3J2 963 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 GPR137Q96N19 417 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 ZNF224Q9NZL3 707 aa19.53■□□□□ 0.72
CTCF-202ENST00000401394 TRPM6Q9BX84 2022 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 TRIOO75962 3097 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 SNTNA6NMZ2 147 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 LILRB3O75022 631 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 SOX30O94993 753 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 STOMP27105 288 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 TALDO1P37837 337 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 ZP1P60852 638 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 MAPK14Q16539 360 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 STPG1Q5TH74 334 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 OAFQ86UD1 273 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 KCT2Q8NC54 265 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 GIMAP1Q8WWP7 306 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 FAIM2Q9BWQ8 316 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 OR52D1Q9H346 318 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 ACSS1Q9NUB1 689 aaPredicted RBP19.52■□□□□ 0.72
CTCF-202ENST00000401394 OR6C2Q9NZP2 312 aa19.52■□□□□ 0.72
CTCF-202ENST00000401394 TSPAN11A1L157 253 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 GATBO75879 557 aaKnown RBP19.52■□□□□ 0.71
CTCF-202ENST00000401394 FGF18O76093 207 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 RGS11O94810 467 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 PAICSP22234 425 aaKnown RBP19.52■□□□□ 0.71
CTCF-202ENST00000401394 NTSP30990 170 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 PYCR1P32322 319 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 ERVFC1P60507 584 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 REEP5Q00765 189 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 ST3GAL3Q11203 375 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 CDONQ4KMG0 1287 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 HBMQ6B0K9 141 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 KIAA1211LQ6NV74 962 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 ACBD7Q8N6N7 88 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 OR5K2Q8NHB8 316 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 SCMH1Q96GD3 660 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 CACNG6Q9BXT2 260 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 FKRPQ9H9S5 495 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 SPHK1Q9NYA1 384 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 USP36Q9P275 1121 aaKnown RBP19.52■□□□□ 0.71
CTCF-202ENST00000401394 KCNN3Q9UGI6 736 aa19.52■□□□□ 0.71
CTCF-202ENST00000401394 MDC1Q14676 2089 aaKnown RBP19.52■□□□□ 0.71
CTCF-202ENST00000401394 ANKRD61A6NGH8 418 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 CDK2AP1O14519 115 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 GNB5O14775 395 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 GMDSO60547 372 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 ADRB3P13945 408 aa19.51■□□□□ 0.71
CTCF-202ENST00000401394 TEAD1P28347 426 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms