RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GPAT3Q53EU6 434 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 TMEM211Q6ICI0 200 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 FRRS1Q6ZNA5 592 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 ZNF619Q8N2I2 560 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 ZNF614Q8N883 585 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 SFXN2Q96NB2 322 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 RAD21L1Q9H4I0 556 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 THUMPD1Q9NXG2 353 aaKnown RBP19.69■□□□□ 0.74
CLN3-207ENST00000395653 KCNE5Q9UJ90 142 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 LEF1Q9UJU2 399 aaPredicted RBP19.69■□□□□ 0.74
CLN3-207ENST00000395653 NDUFAF1Q9Y375 327 aa19.69■□□□□ 0.74
CLN3-207ENST00000395653 DIDO1Q9BTC0 2240 aaKnown RBP19.69■□□□□ 0.74
CLN3-207ENST00000395653 A0A087WZY1 265 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 CLIC1O00299 241 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 H6PDO95479 791 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 CRATP43155 626 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SMSP52788 366 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 B3GALT5-AS1P59052 145 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SF3A3Q12874 501 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLN3-207ENST00000395653 DCST1Q5T197 706 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 PDZK1Q5T2W1 519 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ENPP6Q6UWR7 440 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 LRRC74BQ6ZQY2 392 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 OLIG3Q7RTU3 272 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ULK2Q8IYT8 1036 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 B4GALNT2Q8NHY0 566 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 C10orf82Q8WW14 230 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 WDYHV1Q96HA8 205 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SLC25A37Q9NYZ2 338 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SLAMF8Q9P0V8 285 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 RPH3AQ9Y2J0 694 aaPredicted RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 FAM215AQ9Y5M1 114 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 GMEB1Q9Y692 573 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 DOPEY2Q9Y3R5 2298 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 MYO7BQ6PIF6 2116 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ASH1LQ9NR48 2969 aaKnown RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 TRBV5-3A0A0A0MS03 114 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SERINC4A6NH21 518 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 AHRRA9YTQ3 701 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 LINC01387J3KSC0 135 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ANGPT2O15123 496 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 HCRTR2O43614 444 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 TNFRSF21O75509 655 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ETFAP13804 333 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 CPN1P15169 458 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 PPIBP23284 216 aaKnown RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 ADH7P40394 386 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 DSTNP60981 165 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ZNF117Q03924 483 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 FADDQ13158 208 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 SYPL1Q16563 259 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 C1orf185Q5T7R7 199 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 RAET1LQ5VY80 246 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 RTL6Q6ICC9 239 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 B3GNT6Q6ZMB0 384 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 MSRB3Q8IXL7 192 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 RPRMLQ8N4K4 120 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 MARVELD2Q8N4S9 558 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ZNF808Q8N4W9 903 aaPredicted RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 DPP10Q8N608 796 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ANKFN1Q8N957 763 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ITLN2Q8WWU7 325 aaPredicted RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 SH3YL1Q96HL8 342 aaPredicted RBP19.68■□□□□ 0.74
CLN3-207ENST00000395653 SLC38A1Q9H2H9 487 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 ALKBH4Q9NXW9 302 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 P2RX2Q9UBL9 471 aa19.68■□□□□ 0.74
CLN3-207ENST00000395653 GTPBP1O00178 669 aaKnown RBP19.67■□□□□ 0.74
CLN3-207ENST00000395653 GMFGO60234 142 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 SNRPB2P08579 225 aaKnown RBP19.67■□□□□ 0.74
CLN3-207ENST00000395653 AGAP20933 346 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 SUMO3P55854 103 aaPredicted RBP19.67■□□□□ 0.74
CLN3-207ENST00000395653 CHRNEQ04844 493 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 SF3B4Q15427 424 aaKnown RBP eCLIP19.67■□□□□ 0.742e-7■■■■□ 24.8
CLN3-207ENST00000395653 RGNQ15493 299 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 ARSKQ6UWY0 536 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 NCCRP1Q6ZVX7 275 aaPredicted RBP19.67■□□□□ 0.74
CLN3-207ENST00000395653 MRGPRGQ86SM5 289 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 PMM1Q92871 262 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 PIGQQ9BRB3 760 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 SAR1AQ9NR31 198 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 VAPAQ9P0L0 249 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 ICAM5Q9UMF0 924 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 CAMK2AQ9UQM7 478 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 VDAC3Q9Y277 283 aa19.67■□□□□ 0.74
CLN3-207ENST00000395653 CENPVL1A0A0U1RR11 272 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 OR2M5A3KFT3 312 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 ZNF264O43296 627 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 EIF4E2O60573 245 aaKnown RBP19.66■□□□□ 0.74
CLN3-207ENST00000395653 CHRM4P08173 479 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 NR2F1P10589 423 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 UBL4AP11441 157 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 BMP2P12643 396 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 TCEA1P23193 301 aaKnown RBP19.66■□□□□ 0.74
CLN3-207ENST00000395653 LHX2P50458 406 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 RNF144AP50876 292 aaPredicted RBP19.66■□□□□ 0.74
CLN3-207ENST00000395653 P2RX1P51575 399 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 FGFBP1Q14512 234 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 MAPK14Q16539 360 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 BCL2A1Q16548 175 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 TMEM44Q2T9K0 475 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms