RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 SNRNP27Q8WVK2 155 aaKnown RBP20■□□□□ 0.79
TRIM54-202ENST00000380075 HOXB13Q92826 284 aaPredicted RBP20■□□□□ 0.79
TRIM54-202ENST00000380075 SMOC1Q9H4F8 434 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 SLC7A7Q9UM01 511 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 SSR3Q9UNL2 185 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 A0A1W2PR77 199 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 HYKKA2RU49 373 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CPEP16870 476 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 TGM1P22735 817 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CD38P28907 300 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 MPLP40238 635 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 SOX3P41225 446 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 AFF3P51826 1226 aaKnown RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 WNT4P56705 351 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 RPS3AP61247 264 aaKnown RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 POU6F2P78424 691 aaPredicted RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 DOC2BQ14184 412 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 PHC2Q8IXK0 858 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 C14orf105Q9NVL8 296 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CLCA2Q9UQC9 943 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 PCDHGA5Q9Y5G8 931 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 SCN3AQ9NY46 2000 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 BLACEA4D250 179 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 ZNF670-ZNF695F2Z2N8 137 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 SURF4O15260 269 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CRYBB2P43320 205 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 BNC1Q01954 994 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 PGGHGQ32M88 737 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 ZNF542PQ5EBM4 170 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CCNJQ5T5M9 372 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 C19orf47Q8N9M1 422 aaKnown RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 GPR151Q8TDV0 419 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 TMEM255BQ8WV15 326 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 ANKRD9Q96BM1 317 aaPredicted RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 ASPNQ9BXN1 380 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 NUAK2Q9H093 628 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 EXOSC4Q9NPD3 245 aaKnown RBP19.99■□□□□ 0.79
TRIM54-202ENST00000380075 SUSD2Q9UGT4 822 aa19.99■□□□□ 0.79
TRIM54-202ENST00000380075 CDHR4A6H8M9 788 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 PROB1E7EW31 1015 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 NKX2-2O95096 273 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 ETV5P41161 510 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 ETV1P50549 477 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 COPZ1P61923 177 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 MRPL2Q5T653 305 aaKnown RBP19.98■□□□□ 0.79
TRIM54-202ENST00000380075 ARHGEF39Q8N4T4 335 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 OR2T33Q8NG76 320 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 FSCN3Q9NQT6 498 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 NTNG1Q9Y2I2 539 aa19.98■□□□□ 0.79
TRIM54-202ENST00000380075 BRINP1O60477 761 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 CFIP05156 583 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 ST6GAL1P15907 406 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 HOXD12P35452 270 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 GPR4P46093 362 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 MAP4K2Q12851 820 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 MAPK14Q16539 360 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 AADACL4Q5VUY2 407 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 MEX3DQ86XN8 651 aaKnown RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 BRIX1Q8TDN6 353 aaKnown RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 ADAMTS18Q8TE60 1221 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 CNPPD1Q9BV87 410 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SP140LQ9H930 580 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 GMEB2Q9UKD1 530 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 GOLGA4Q13439 2230 aaKnown RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 TNRC6BQ9UPQ9 1833 aaKnown RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 ARHGEF17Q96PE2 2063 aaPredicted RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SGK494L7N484 410 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SRPX2O60687 465 aaPredicted RBP19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SNX4O95219 450 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 CDH11P55287 796 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SPANXN2Q5MJ10 180 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 CLEC12AQ5QGZ9 265 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 PLA2G2CQ5R387 149 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 RPL13AP3Q6NVV1 102 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 SFTPA2Q8IWL1 248 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 VWA5B2Q8N398 1253 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 OR4Q3Q8NH05 313 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 PIK3R3Q92569 461 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 PRSS27Q9BQR3 290 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 UCK1Q9HA47 277 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 TMEM5Q9Y2B1 443 aa19.97■□□□□ 0.79
TRIM54-202ENST00000380075 CENPVL1A0A0U1RR11 272 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 A0A1B0GVT2 93 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 LOC110117498-PIK3R3F6TDL0 507 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 OR10H2O60403 315 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 RDH16O75452 317 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 GABRA3P34903 492 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 PPP1CAP62136 330 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 OR1Q1Q15612 314 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 PRTGQ2VWP7 1150 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 TRIM61Q5EBN2 209 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 NXNL2Q5VZ03 156 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 SLC30A6Q6NXT4 461 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 PAQR6Q6TCH4 344 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 LAPTM4BQ86VI4 370 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 GALNT12Q8IXK2 581 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 GALNT6Q8NCL4 622 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 CEP76Q8TAP6 659 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 LRRC61Q9BV99 259 aa19.96■□□□□ 0.79
TRIM54-202ENST00000380075 FAM60AQ9NP50 221 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms