RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 OR2B2Q9GZK3 357 aa17.05■□□□□ 0.32
SSU72-203ENST00000378725 ZNF835Q9Y2P0 537 aa17.05■□□□□ 0.32
SSU72-203ENST00000378725 LIPGQ9Y5X9 500 aa17.05■□□□□ 0.32
SSU72-203ENST00000378725 SHANK1Q9Y566 2161 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 TRGV5A0A0B4J1U4 118 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 A0A1B0GTH9 108 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 J3QKU1 62 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 NDUFAB1O14561 156 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 AIM2O14862 343 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 ZIC3O60481 467 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 CDC40O60508 579 aaKnown RBP eCLIP17.04■□□□□ 0.32
SSU72-203ENST00000378725 TRAPPC6AO75865 159 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 SLC6A2P23975 617 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 DSCR4P56555 118 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 HSF1Q00613 529 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 MRPL49Q13405 166 aaKnown RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 FGFBP1Q14512 234 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 ZNF630Q2M218 657 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 C8orf82Q6P1X6 216 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 FGD2Q7Z6J4 655 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 PTOV1Q86YD1 416 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 FITM2Q8N6M3 262 aa17.04■□□□□ 0.32
SSU72-203ENST00000378725 FAM83FQ8NEG4 500 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 HOPXQ9BPY8 73 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 QRSL1Q9H0R6 528 aaKnown RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.04■□□□□ 0.32
SSU72-203ENST00000378725 AQP7O14520 342 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 EIF4E2O60573 245 aaKnown RBP17.03■□□□□ 0.32
SSU72-203ENST00000378725 PGM3O95394 542 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 GNLYP22749 145 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 DPP4P27487 766 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 KCNJ10P78508 379 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 CDK6Q00534 326 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 RBBP4Q09028 425 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 GANABQ14697 944 aaKnown RBP17.03■□□□□ 0.32
SSU72-203ENST00000378725 KRT72Q14CN4 511 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 EIPR1Q53HC9 387 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 RABL3Q5HYI8 236 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 ARHGAP11AQ6P4F7 1023 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 Q6ZPB1 254 aaPredicted RBP17.03■□□□□ 0.32
SSU72-203ENST00000378725 CALHM3Q86XJ0 350 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 OR10A6Q8NH74 314 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 B4GALNT2Q8NHY0 566 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 NFKBIDQ8NI38 313 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 NEIL3Q8TAT5 605 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 C1GALT1C1Q96EU7 318 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 LDAHQ9H6V9 325 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 PTGES2Q9H7Z7 377 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 ARL8BQ9NVJ2 186 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 ICAM5Q9UMF0 924 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 L3MBTL1Q9Y468 752 aa17.03■□□□□ 0.32
SSU72-203ENST00000378725 NINQ8N4C6 2090 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 OR14I1A6ND48 311 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 GTPBP1O00178 669 aaKnown RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 ZNF264O43296 627 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 OIP5O43482 229 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 DBIP07108 87 aaKnown RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 PGM1P36871 562 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ZNF117Q03924 483 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 RBPJQ06330 500 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ART3Q13508 389 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ELOAQ14241 798 aaKnown RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 TOMM20Q15388 145 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.02■□□□□ 0.323e-6■□□□□ 9.4
SSU72-203ENST00000378725 GLYR1Q49A26 553 aaPredicted RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 NHSL2Q5HYW2 709 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 RPS26P11Q5JNZ5 115 aaPredicted RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 WIPI1Q5MNZ9 446 aaPredicted RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 REEP3Q6NUK4 255 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 CBLN3Q6UW01 205 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 EIF3MQ7L2H7 374 aaKnown RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 YRDCQ86U90 279 aaKnown RBP17.02■□□□□ 0.32
SSU72-203ENST00000378725 SPPL2CQ8IUH8 684 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 CMIPQ8IY22 773 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 PEX5LQ8IYB4 626 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ZNF614Q8N883 585 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 FAM71CQ8NEG0 241 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 BBS10Q8TAM1 723 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 SPATA9Q9BWV2 254 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 LAT2Q9GZY6 243 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 SLC6A15Q9H2J7 730 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 TAS2R10Q9NYW0 307 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 TAGLN3Q9UI15 199 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 SLC35A3Q9Y2D2 325 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 CARD8Q9Y2G2 431 aa17.02■□□□□ 0.32
SSU72-203ENST00000378725 ZNF462Q96JM2 2506 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 C15orf38-AP3S2A0A0A6YYH1 394 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 C5orf58C9J3I9 102 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 HCRTR2O43614 444 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 DNAJA2O60884 412 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 CSTAP01040 98 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 UBL4AP11441 157 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 ETS2P15036 469 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 PTGS2P35354 604 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 UQCRFS1P47985 274 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 RNF144AP50876 292 aaPredicted RBP17.01■□□□□ 0.31
SSU72-203ENST00000378725 P2RX1P51575 399 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 SUMO3P55854 103 aaPredicted RBP17.01■□□□□ 0.31
SSU72-203ENST00000378725 SCARB2Q14108 478 aa17.01■□□□□ 0.31
SSU72-203ENST00000378725 ARPINQ7Z6K5 226 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms