RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 F5H0A9 414 aaPredicted RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 GFYI3L273 518 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 FGF19O95750 216 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CFL1P23528 166 aaKnown RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 B4GALNT1Q00973 533 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 EFR3AQ14156 821 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 C3orf38Q5JPI3 329 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 SLC22A10Q63ZE4 541 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CCDC190Q86UF4 302 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 ZNF683Q8IZ20 524 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CAMKVQ8NCB2 501 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 OR56A3Q8NH54 315 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CREB3L4Q8TEY5 395 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 TMEM239Q8WW34 195 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 APH1BQ8WW43 257 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 SMPDL3BQ92485 455 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CPEB1Q9BZB8 566 aaKnown RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 MTHFD2LQ9H903 347 aaPredicted RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 NTNG1Q9Y2I2 539 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 K7ESM1 405 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 PLPP1O14494 284 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 RENP00797 406 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 LIPCP11150 499 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 CD22P20273 847 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 ENDOUP21128 410 aaKnown RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 MLLT3P42568 568 aaPredicted RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 E2F1Q01094 437 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 LTB4RQ15722 352 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 SWI5Q1ZZU3 235 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 C18orf63Q68DL7 685 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 ESPNLQ6ZVH7 1005 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 PRICKLE2Q7Z3G6 844 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 TMEFF1Q8IYR6 380 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 SMAP2Q8WU79 429 aaPredicted RBP13.04□□□□□ -0.32
COL6A1-201ENST00000361866 THAP4Q8WY91 577 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 DTD2Q96FN9 168 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 OR7D2Q96RA2 312 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 LMF1Q96S06 567 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 ACTRT3Q9BYD9 372 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 GLIPR2Q9H4G4 154 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 C11orf49Q9H6J7 331 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 TM7SF3Q9NS93 570 aa13.04□□□□□ -0.32
COL6A1-201ENST00000361866 H7C2Y5 167 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 LDB3O75112 727 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 SLCO2B1O94956 709 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 CSTAP01040 98 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 PDGFAP04085 211 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 GDI2P50395 445 aaKnown RBP13.03□□□□□ -0.32
COL6A1-201ENST00000361866 FABP5Q01469 135 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 FAM198BQ6UWH4 519 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 HTR3DQ70Z44 454 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 TOR1AIP2Q8NFQ8 470 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ZDHHC1Q8WTX9 485 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 SLC22A18Q96BI1 424 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 PINK1Q9BXM7 581 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 GLTPQ9NZD2 209 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 A0A087WUU8 490 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 SLC9B1P1A6NJY1 282 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ACOD1A6NK06 481 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 SLC2A10O95528 541 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ZNF823P16415 610 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 WNT3P56703 355 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 TSPAN31Q12999 210 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 GALEQ14376 348 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ABHD13Q7L211 337 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 CCDC107Q8WV48 283 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 LRIG1Q96JA1 1093 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 C14orf105Q9NVL8 296 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 TRIP12Q14669 1992 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-201ENST00000361866 FZD6O60353 706 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 LIM2P55344 173 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 PRRT3Q5FWE3 981 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 FAM27D1Q5T7N8 215 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ASPGQ86U10 573 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ZNF227Q86WZ6 799 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ZNF761Q86XN6 746 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-201ENST00000361866 NKAIN4Q8IVV8 208 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 SPAG16Q8N0X2 631 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 OR13C2Q8NGS9 318 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 TM4SF18Q96CE8 201 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 BPIFA2Q96DR5 249 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 NEURL3Q96EH8 262 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 ATG5Q9H1Y0 275 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 Q9N2J8 555 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 PNO1Q9NRX1 252 aaKnown RBP13.03□□□□□ -0.32
COL6A1-201ENST00000361866 COPZ2Q9P299 210 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 HS3ST2Q9Y278 367 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 IER3IP1Q9Y5U9 82 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 COL24A1Q17RW2 1714 aa13.03□□□□□ -0.32
COL6A1-201ENST00000361866 TRAV18A0A075B6X5 111 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 FOXE1O00358 373 aaPredicted RBP13.02□□□□□ -0.32
COL6A1-201ENST00000361866 PPM1DO15297 605 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 GIMD1P0DJR0 217 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 GZMKP49863 264 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 ACTC1P68032 377 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 ACTA1P68133 377 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 INSL4Q14641 139 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 TOMM20Q15388 145 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 CNKSR3Q6P9H4 555 aa13.02□□□□□ -0.32
COL6A1-201ENST00000361866 GHSRQ92847 366 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms