RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CASP3P42574 277 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 MRPS21P82921 87 aaKnown RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 GLYR1Q49A26 553 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 B3GLCTQ6Y288 498 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 CXXC5Q7LFL8 322 aaKnown RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 OR13H1Q8NG92 308 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 FANK1Q8TC84 345 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 RSC1A1Q92681 617 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 DIRAS2Q96HU8 199 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 TMED9Q9BVK6 235 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 MCOLN1Q9GZU1 580 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 ATP13A2Q9NQ11 1180 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 STARD5Q9NSY2 213 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 POT1Q9NUX5 634 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 SIDT1Q9NXL6 827 aaKnown RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 MAT2BQ9NZL9 334 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF223Q9UK11 482 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 ENTPD2Q9Y5L3 495 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 CELP19835 753 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 MAKP20794 623 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 CAV3P56539 151 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 FXYD6P3P58550 94 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 LRIT3Q3SXY7 679 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 DDI2Q5TDH0 399 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 SLC22A18ASQ8N1D0 253 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 SIRT6Q8N6T7 355 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 TMEM239Q8WW34 195 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 SPRYD4Q8WW59 207 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 DCLRE1CQ96SD1 692 aaKnown RBP20.23■□□□□ 0.83
SHMT1-202ENST00000352886 STACQ99469 402 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 TBC1D17Q9HA65 648 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 TNFRSF10DQ9UBN6 386 aa20.23■□□□□ 0.83
SHMT1-202ENST00000352886 TRDV1A0A1B0GX56 115 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 FABP12A6NFH5 140 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 AKAP8O43823 692 aaKnown RBP20.22■□□□□ 0.83
SHMT1-202ENST00000352886 IFI30P13284 250 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 PPP1CAP62136 330 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF542PQ5EBM4 170 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 PLBD1Q6P4A8 553 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 SMARCD3Q6STE5 483 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 RNF44Q7L0R7 432 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 ZNF761Q86XN6 746 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-202ENST00000352886 CA13Q8N1Q1 262 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 CSNK1A1LQ8N752 337 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 FRMD1Q8N878 549 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 OR51G2Q8NGK0 314 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 BRIX1Q8TDN6 353 aaKnown RBP20.22■□□□□ 0.83
SHMT1-202ENST00000352886 ZFPM2Q8WW38 1151 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 ARSGQ96EG1 525 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 NEDD4LQ96PU5 975 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 CD180Q99467 661 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 HDHD5Q9BXW7 423 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 A0A0J9YY10 115 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 LINC00854A0A1B0GVQ3 168 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 A0A1W2PQ09 198 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 CASKO14936 926 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 CHST10O43529 356 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 DYRK3O43781 588 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 GALR3O60755 368 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-202ENST00000352886 TNFP01375 233 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 GABRA3P34903 492 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 VSX2P58304 361 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-202ENST00000352886 FAM181AQ8N9Y4 354 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 OR52L1Q8NGH7 329 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 AP3S1Q92572 193 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 NACC2Q96BF6 587 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 ENKD1Q9H0I2 346 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 PCDHGB2Q9Y5G2 931 aa20.22■□□□□ 0.83
SHMT1-202ENST00000352886 TDRD6O60522 2096 aaKnown RBP20.21■□□□□ 0.83
SHMT1-202ENST00000352886 CELA2BP08218 269 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-202ENST00000352886 MGAT2Q10469 447 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 KCNJ8Q15842 424 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 SLC35F1Q5T1Q4 408 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 OR52N1Q8NH53 320 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 GPBAR1Q8TDU6 330 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 HS6ST2Q96MM7 605 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 CAPN10Q9HC96 672 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 GXYLT2A0PJZ3 443 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 SGK494L7N484 410 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 LYPD3O95274 346 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 GABRG2P18507 467 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 RFX2P48378 723 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 UBE2IP63279 158 aaKnown RBP20.21■□□□□ 0.83
SHMT1-202ENST00000352886 TAB1Q15750 504 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 RNF113BQ8IZP6 322 aaKnown RBP20.21■□□□□ 0.83
SHMT1-202ENST00000352886 ARIH2OSQ8N7S6 290 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 SLC37A2Q8TED4 501 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 MED20Q9H944 212 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 ITGB1BP2Q9UKP3 347 aa20.21■□□□□ 0.83
SHMT1-202ENST00000352886 HCRTR1O43613 425 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 SEMA4FO95754 770 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 BMP7P18075 431 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 RFX3P48380 749 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 OR2B6P58173 313 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 POU6F2P78424 691 aaPredicted RBP20.2■□□□□ 0.82
SHMT1-202ENST00000352886 ACSM1Q08AH1 577 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 INSL4Q14641 139 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 AGAP6Q5VW22 663 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 ZCCHC12Q6PEW1 402 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 XKRXQ6PP77 449 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms