RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ADGRF3Q8IZF5 1079 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 DUSP19Q8WTR2 217 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 SENP5Q96HI0 755 aaPredicted RBP9.47□□□□□ -0.89
USP54-201ENST00000339859 OR2A14Q96R47 310 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 MFRPQ9BY79 579 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 GLIPR2Q9H4G4 154 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 IFT46Q9NQC8 304 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 INIPQ9NRY2 104 aa9.47□□□□□ -0.89
USP54-201ENST00000339859 F10P00742 488 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 ADAP00813 363 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 TPOP07202 933 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 POU3F3P20264 500 aaPredicted RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 TNFSF4P23510 183 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 SSTR4P31391 388 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 CARD18P57730 90 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 HBA1P69905 142 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 STK11Q15831 433 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 PAGE3Q5JUK9 113 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 RSBN1Q5VWQ0 802 aaPredicted RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 LCN8Q6JVE9 175 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 ZNF585AQ6P3V2 769 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 ISLR2Q6UXK2 745 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 CNN2Q99439 309 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 PITX2Q99697 317 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 DSN1Q9H410 356 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 DDX31Q9H8H2 851 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 PILRBQ9UKJ0 227 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 CARD8Q9Y2G2 431 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 COMMD3-BMI1R4GMX3 469 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 GGT3PA6NGU5 568 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 SLC22A31A6NKX4 558 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 KLK8O60259 260 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 EIF1BO60739 113 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 PRKRAO75569 313 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 GATBO75879 557 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 MSL3P1P0C860 447 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 LTBRP36941 435 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 RPL5P46777 297 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 RIDAP52758 137 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 PCBD1P61457 104 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 GTDC1Q4AE62 458 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 UBE2Q1Q7Z7E8 422 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 OR2T11Q8NH01 316 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 YTHDF1Q9BYJ9 559 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 MYO9BQ13459 2157 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 A0A1W2PQ72 361 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 PATE3B3GLJ2 98 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 EIF4E2O60573 245 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 IFNA6P05013 189 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 PTGER1P34995 402 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 FASLGP48023 281 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 PPIAP62937 165 aaKnown RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 OR1Q1Q15612 314 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 HBMQ6B0K9 141 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 OR2A1Q8NGT9 310 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 CCM2LQ9NUG4 571 aaPredicted RBP9.46□□□□□ -0.89
USP54-201ENST00000339859 NPFFR2Q9Y5X5 522 aa9.46□□□□□ -0.89
USP54-201ENST00000339859 M0R3H8 397 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 IGHV4-34P06331 123 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 FUT1P19526 365 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 ACTA2P62736 377 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 ACTG2P63267 376 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 TAB1Q15750 504 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 VRK2Q86Y07 508 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 TCEAL3Q969E4 200 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 GPR87Q9BY21 358 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 ITPAQ9BY32 194 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 A4GALTQ9NPC4 353 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 LRFN1Q9P244 771 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 NOSIPQ9Y314 301 aaKnown RBP9.46□□□□□ -0.9
USP54-201ENST00000339859 LOC102725191A0A1B0GVB3 256 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 CLUP10909 449 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 MLLT10P55197 1068 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 TRIM16LQ309B1 348 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 TREML1Q86YW5 311 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 TCEANCQ8N8B7 351 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 ANKK1Q8NFD2 765 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 OR52E2Q8NGJ4 325 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 SARAFQ96BY9 339 aa9.46□□□□□ -0.9
USP54-201ENST00000339859 SRA1Q9HD15 236 aaKnown RBP9.46□□□□□ -0.9
USP54-201ENST00000339859 CD160O95971 181 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 LSM3P62310 102 aaKnown RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 CRTC2Q53ET0 693 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 CEP78Q5JTW2 689 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 OR5M10Q6IEU7 315 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 TRIM8Q9BZR9 551 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 SPAARA0A1B0GVQ0 90 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 WNT11O96014 354 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 IGHG1P01857 330 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 CELA2BP08218 269 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 CKMT1AP12532 417 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 CRISP1P54107 249 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 TMEM176BQ3YBM2 270 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 FAM205BPQ63HN1 556 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 XKR5Q6UX68 686 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 TM9SF2Q99805 663 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 DCUN1D5Q9BTE7 237 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 ANKRD10Q9NXR5 420 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 LCMT2O60294 686 aaKnown RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 ZNF432O94892 652 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms