RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 UBXN10Q96LJ8 280 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 MCTS1Q9ULC4 181 aaKnown RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 A0A1W2PQL4 384 aaPredicted RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 NPIPB15A6NHN6 443 aaPredicted RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 KDM4EB2RXH2 506 aaPredicted RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 TNFRSF10AO00220 468 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CCBE1Q6UXH8 406 aaPredicted RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 PDZD9Q8IXQ8 264 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 EID2Q8N6I1 236 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 OR2A12Q8NGT7 310 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 OR14A2Q96R54 314 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 TRIM23P36406 574 aa11.9□□□□□ -0.51
SDC3-201ENST00000336798 RRAS2P62070 204 aaPredicted RBP11.9□□□□□ -0.51
SDC3-201ENST00000336798 ZP2Q05996 745 aa11.9□□□□□ -0.51
SDC3-201ENST00000336798 IL20RBQ6UXL0 311 aa11.9□□□□□ -0.51
SDC3-201ENST00000336798 TRMT2BQ96GJ1 504 aaKnown RBP11.9□□□□□ -0.51
SDC3-201ENST00000336798 FUNDC2Q9BWH2 189 aa11.9□□□□□ -0.51
SDC3-201ENST00000336798 RETP07949 1114 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 UBL4AP11441 157 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 TMBIM6P55061 237 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 MELKQ14680 651 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 C21orf62-AS1Q17RA5 79 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 LYSMD4Q5XG99 296 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ANKRD54Q6NXT1 300 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 BLOC1S3Q6QNY0 202 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 BAIAP2L2Q6UXY1 529 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 TMEFF1Q8IYR6 380 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 UMODL1-AS1Q8N2C9 162 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ENDOVQ8N8Q3 282 aaKnown RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 OR7G2Q8NG99 324 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SYNPRQ8TBG9 265 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SNX18Q96RF0 628 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ENKD1Q9H0I2 346 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 RPS10P5Q9NQ39 176 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 MEPEQ9NQ76 525 aaPredicted RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 BIN3Q9NQY0 253 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 TMEM59LQ9UK28 342 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 CEBPZOSA8MTT3 80 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 G3V3Y1 287 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 AK1P00568 194 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 IFNA17P01571 189 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 RAB31Q13636 194 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SF3A2Q15428 464 aaKnown RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 SFRP5Q5T4F7 317 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ZNF574Q6ZN55 896 aaPredicted RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 SERINC5Q86VE9 423 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 RNF175Q8N4F7 328 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 WDSUB1Q8N9V3 476 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ADOQ96SZ5 270 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 PPA2Q9H2U2 334 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 LPLP06858 475 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 PSMB5P28074 263 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 CPOXP36551 454 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 CLDN8P56748 225 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 RGNQ15493 299 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 PAN3Q58A45 887 aaKnown RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 KIAA1211LQ6NV74 962 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ABHD12BQ7Z5M8 362 aaPredicted RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 SGPP2Q8IWX5 399 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 HSD17B8Q92506 261 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ZNF223Q9UK11 482 aaPredicted RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 SLC22A5O76082 557 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 NXPH3O95157 252 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 CSNK1A1P48729 337 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 MS4A4EQ96PG1 132 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 A0A087WUU8 490 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 A6NHS1 94 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SNAPC5O75971 98 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 MT-CO2P00403 227 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 GGT1P19440 569 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 CHRNB4P30926 498 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 ACY1Q03154 408 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 RING1Q06587 406 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 FXNQ16595 210 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 FUBP1Q96AE4 644 aaKnown RBP11.89□□□□□ -0.51
SDC3-201ENST00000336798 TRIB3Q96RU7 358 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SPO11Q9Y5K1 396 aa11.89□□□□□ -0.51
SDC3-201ENST00000336798 SOBPA7XYQ1 873 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 EFCAB7A8K855 629 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 TYROBPO43914 113 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 GMDSO60547 372 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 DAP3P51398 398 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 RPS18P62269 152 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 NKX6-1P78426 367 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 MAT1AQ00266 395 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 CDK3Q00526 305 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 GAB1Q13480 694 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 GALEQ14376 348 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 FAM109AQ8N4B1 249 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SLC15A4Q8N697 577 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 OR9A4Q8NGU2 314 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 CNTNAP3BQ96NU0 1288 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 APMAPQ9HDC9 416 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 TEX10Q9NXF1 929 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 DNAJC15Q9Y5T4 150 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 TMEM131LA2VDJ0 1609 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 MYO5BQ9ULV0 1848 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SNED1Q8TER0 1413 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 TSTD3H0UI37 97 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SOCS6O14544 535 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms