RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 UBQLN3Q9H347 655 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 PLSCR3Q9NRY6 295 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 EVA1BQ9NVM1 165 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 ACTR10Q9NZ32 417 aa15.48■□□□□ 0.07
VPS54-201ENST00000272322 SIRT4Q9Y6E7 314 aaPredicted RBP15.48■□□□□ 0.07
VPS54-201ENST00000272322 HTR3EA5X5Y0 456 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 TMEM221A6NGB7 291 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 IMPA2O14732 288 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 PLRG1O43660 514 aaKnown RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 OR10H2O60403 315 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 PAHP00439 452 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 BMP7P18075 431 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 MAOBP27338 520 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 GRPRP30550 384 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 IFNGR2P38484 337 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 PAQR7Q86WK9 346 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 NATD1Q8N6N6 113 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 ACOT11Q8WXI4 607 aaPredicted RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 PSD2Q9BQI7 771 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 WACQ9BTA9 647 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 C1QTNF7Q9BXJ2 289 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 NXF2Q9GZY0 626 aaKnown RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 BCL2L10Q9HD36 194 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 ZSCAN32Q9NX65 697 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 DAPP1Q9UN19 280 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 ARRDC5A6NEK1 342 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 B4DGG1 531 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 E9PI62 339 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 J3QLW9 94 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 PTTG1O95997 202 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 ZNF19P17023 458 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 HTR2AP28223 471 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 INPP1P49441 399 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 ZNF155Q12901 538 aaPredicted RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 SUZ12Q15022 739 aaKnown RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 ZNF57Q68EA5 555 aaPredicted RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 TUBA3EQ6PEY2 450 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 CNIH2Q6PI25 160 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 CXXC5Q7LFL8 322 aaKnown RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 OR13H1Q8NG92 308 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 RSC1A1Q92681 617 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 DHRS1Q96LJ7 313 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 OR2A5Q96R48 311 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 KIR3DX1Q9H7L2 352 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 OR6C2Q9NZP2 312 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 TCRBV21S2A2A0A5A6 115 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 PIPP12273 146 aaPredicted RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 TBRG1Q3YBR2 411 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 DDI2Q5TDH0 399 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 POMZP3Q6PJE2 187 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 OR2T33Q8NG76 320 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 CNOT9Q92600 299 aaKnown RBP15.47■□□□□ 0.07
VPS54-201ENST00000272322 SLC25A46Q96AG3 418 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 WDR92Q96MX6 357 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 FAM60AQ9NP50 221 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 NLKQ9UBE8 527 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 NCKAP1Q9Y2A7 1128 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 GSTK1Q9Y2Q3 226 aa15.47■□□□□ 0.07
VPS54-201ENST00000272322 KIAA1549LQ6ZVL6 1849 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 A0A0A6YYC8 382 aaPredicted RBP15.46■□□□□ 0.07
VPS54-201ENST00000272322 I3L1I5 382 aaPredicted RBP15.46■□□□□ 0.07
VPS54-201ENST00000272322 NDUFV2P19404 249 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 HOXD12P35452 270 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 NAA10P41227 235 aaPredicted RBP15.46■□□□□ 0.07
VPS54-201ENST00000272322 C10orf90Q96M02 699 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 RAB11FIP5Q9BXF6 653 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 NT5DC2Q9H857 520 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 A0A0B4J203 849 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 CSF3P09919 207 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 PEPDP12955 493 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 GSTM3P21266 225 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 CTHP32929 405 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 CCR4P51679 360 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 LIMK1P53667 647 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 OR10A3P58181 314 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 ABATP80404 500 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 SFSWAPQ12872 951 aaKnown RBP15.46■□□□□ 0.07
VPS54-201ENST00000272322 OR1Q1Q15612 314 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 PGGHGQ32M88 737 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 PRSS58Q8IYP2 241 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 MINDY2Q8NBR6 621 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 GPR174Q9BXC1 333 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 FN3KQ9H479 309 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 KLF15Q9UIH9 416 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 PIAS3Q9Y6X2 628 aa15.46■□□□□ 0.07
VPS54-201ENST00000272322 SMLR1H3BR10 107 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 RFPL3O75679 317 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 SLC2A2P11168 524 aaPredicted RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 TRA2BP62995 288 aaKnown RBP15.45■□□□□ 0.06
VPS54-201ENST00000272322 TNFRSF17Q02223 184 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 HYAL1Q12794 435 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 ALG11Q2TAA5 492 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 TMEM201Q5SNT2 666 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 DCST2Q5T1A1 773 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 C19orf48Q6RUI8 117 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 RAB43Q86YS6 212 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 FANK1Q8TC84 345 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 MS4A4EQ96PG1 132 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 SRRQ9GZT4 340 aa15.45■□□□□ 0.06
VPS54-201ENST00000272322 CYP8B1Q9UNU6 501 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms