RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GM2AP17900 193 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 DNASE1P24855 282 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 CD38P28907 300 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 ZNF791Q3KP31 576 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 GDPD1Q8N9F7 314 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 ATPIF1Q9UII2 106 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 LOC285095A0A1B0GVY8 99 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 LCATP04180 440 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 NPR2P20594 1047 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 PRKXP51817 358 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 CAV3P56539 151 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 RPS26P11Q5JNZ5 115 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 WDR53Q7Z5U6 358 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 C17orf50Q8WW18 174 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 ZNF578Q96N58 590 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 TP53P04637 393 aaPredicted RBP18.02■□□□□ 0.47
UPF1-201ENST00000262803 ZNF542PQ5EBM4 170 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 PPP1R3BQ86XI6 285 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 MRPL43Q8N983 215 aaKnown RBP18.02■□□□□ 0.47
UPF1-201ENST00000262803 OR4K13Q8NH42 304 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 TCTN2Q96GX1 697 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 PRRC1Q96M27 445 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 C7orf50Q9BRJ6 194 aaKnown RBP18.02■□□□□ 0.47
UPF1-201ENST00000262803 RGCCQ9H4X1 137 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 CSNK1G1Q9HCP0 422 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 C17orf113A0A1B0GUU1 675 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 HHLA1C9JL84 531 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 CSF1P09603 554 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 MARCH8Q5T0T0 291 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 PLBD1Q6P4A8 553 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 ATOH8Q96SQ7 321 aa18.02■□□□□ 0.47
UPF1-201ENST00000262803 ANTXRLA6NF34 631 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 IFNA4P05014 189 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 CD34P28906 385 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 NTRK2Q16620 822 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 BOLLQ8N9W6 283 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 OR9K2Q8NGE7 335 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 ASB17Q8WXJ9 295 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 ZNF300Q96RE9 604 aaPredicted RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 RBM24Q9BX46 236 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 INIPQ9NRY2 104 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 OBP2AQ9NY56 170 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 H3BNC9 293 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PRAF2O60831 178 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 IFNA10P01566 189 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 GRPRP30550 384 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 CPOXP36551 454 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 OPRL1P41146 370 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 ZNF595Q8IYB9 648 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PAPOLGQ9BWT3 736 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 BTBD2Q9BX70 525 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 C20orf27Q9GZN8 174 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 ENKD1Q9H0I2 346 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 RIMS3Q9UJD0 308 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PRRC2BQ5JSZ5 2229 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 TOXO94900 526 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PRLP01236 227 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 TOE1Q96GM8 510 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 ACPTQ9BZG2 426 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 OR2B2Q9GZK3 357 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 SDHAF2Q9NX18 166 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 ZNF226Q9NYT6 803 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 LOC105369274A0A096LPK9 316 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PRSS38A1L453 326 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 FNTBP49356 437 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PRLHRP49683 370 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 PIN1Q13526 163 aaPredicted RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 LRRC37A5PQ49AS3 106 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 WBP2NLQ6ICG8 309 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 OR4N4Q8N0Y3 316 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 OR5AR1Q8NGP9 310 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 TMEM239Q8WW34 195 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 CIDECQ96AQ7 238 aaPredicted RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 OR5B2Q96R09 309 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 IL20RAQ9UHF4 553 aa18.01■□□□□ 0.47
UPF1-201ENST00000262803 MYO18AQ92614 2054 aaKnown RBP18.01■□□□□ 0.47
UPF1-201ENST00000262803 TAZQ16635 292 aa18■□□□□ 0.47
UPF1-201ENST00000262803 PM20D2Q8IYS1 436 aa18■□□□□ 0.47
UPF1-201ENST00000262803 OR1J2Q8NGS2 313 aa18■□□□□ 0.47
UPF1-201ENST00000262803 ADAMTS19Q8TE59 1207 aa18■□□□□ 0.47
UPF1-201ENST00000262803 FAIMQ9NVQ4 179 aa18■□□□□ 0.47
UPF1-201ENST00000262803 MGAT4CQ9UBM8 478 aa18■□□□□ 0.47
UPF1-201ENST00000262803 INTS6Q9UL03 887 aaKnown RBP18■□□□□ 0.47
UPF1-201ENST00000262803 TIAM2Q8IVF5 1701 aa18■□□□□ 0.47
UPF1-201ENST00000262803 ZNF701M0R085 212 aaPredicted RBP18■□□□□ 0.47
UPF1-201ENST00000262803 M0R3H8 397 aa18■□□□□ 0.47
UPF1-201ENST00000262803 CERS1P27544 350 aa18■□□□□ 0.47
UPF1-201ENST00000262803 COL9A2Q14055 689 aaPredicted RBP18■□□□□ 0.47
UPF1-201ENST00000262803 PLGLAQ15195 96 aa18■□□□□ 0.47
UPF1-201ENST00000262803 LSM14AQ8ND56 463 aaKnown RBP18■□□□□ 0.47
UPF1-201ENST00000262803 ARRDC2Q8TBH0 407 aa18■□□□□ 0.47
UPF1-201ENST00000262803 SULT4A1Q9BR01 284 aa18■□□□□ 0.47
UPF1-201ENST00000262803 HEBP1Q9NRV9 189 aa18■□□□□ 0.47
UPF1-201ENST00000262803 EDARQ9UNE0 448 aa18■□□□□ 0.47
UPF1-201ENST00000262803 PTTG1O95997 202 aa18■□□□□ 0.47
UPF1-201ENST00000262803 SRYQ05066 204 aa18■□□□□ 0.47
UPF1-201ENST00000262803 MEF2DQ14814 521 aa18■□□□□ 0.47
UPF1-201ENST00000262803 PDLIM5Q96HC4 596 aaKnown RBP18■□□□□ 0.47
UPF1-201ENST00000262803 APMAPQ9HDC9 416 aa18■□□□□ 0.47
UPF1-201ENST00000262803 RLIMQ9NVW2 624 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms