RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PRICKLE2Q7Z3G6 844 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR56B1Q8NGI3 324 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RNF170Q96K19 258 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NCOR1P1Q9H4R4 102 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NRIP3Q9NQ35 241 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TRBV2A0A0J9YWF9 115 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ACOD1A6NK06 481 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TUBG1P23258 451 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RFX3P48380 749 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TPBGQ13641 420 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RBM39Q14498 530 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RGNQ15493 299 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PLEKHH3Q7Z736 793 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NAA40Q86UY6 237 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FBXL6Q8N531 539 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PAQR8Q8TEZ7 354 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 METTL21AQ8WXB1 218 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RAB24Q969Q5 203 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SLC2A6Q9UGQ3 507 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SOX15O60248 233 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MED6O75586 246 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PYCR1P32322 319 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GDNFP39905 211 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 AMHR2Q16671 573 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GTF2H5Q6ZYL4 71 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 AHCYL2Q96HN2 611 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CPPED1Q9BRF8 314 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ALG8Q9BVK2 526 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 C1QTNF3Q9BXJ4 246 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZCCHC4Q9H5U6 513 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM38AQ9H6F2 299 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MYH9P35579 1960 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GJE1A6NN92 205 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF878C9JN71 531 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SYN3O14994 580 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FZD7O75084 574 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CSTBP04080 98 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SFTPBP07988 381 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 HTD2P86397 168 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CDK5Q00535 292 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GLO1Q04760 184 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GRB7Q14451 532 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FLYWCH1Q4VC44 716 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MS4A13Q5J8X5 152 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 LYRM7Q5U5X0 104 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 OR5AK2Q8NH90 309 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SMIM4Q8WVI0 70 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MCHR1Q99705 422 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ELL3Q9HB65 397 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PATZ1Q9HBE1 687 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SCML2Q9UQR0 700 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 COLEC10Q9Y6Z7 277 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 LRG1P02750 347 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CKMP06732 381 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GPR1P46091 355 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RPS13P62277 151 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF155Q12901 538 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 HSPB3Q12988 150 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TMPRSS4Q9NRS4 437 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ELF5Q9UKW6 265 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 DMRT1Q9Y5R6 373 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 C2orf92A0A1B0GVN3 265 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 K7EPK0 472 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 HLA-AP01891 365 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MMP3P08254 477 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 IL13RA1P78552 427 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PNRC1Q12796 327 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM183BQ1AE95 376 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 WSCD1Q658N2 575 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 BAP18Q8IXM2 172 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 YAF2Q8IY57 180 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FAM71E2Q8N5Q1 922 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 DNAJC5GQ8N7S2 189 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF610Q8N9Z0 462 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RBM18Q96H35 190 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FBRSL1Q9HCM7 1045 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MOKQ9UQ07 419 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GABRPO00591 440 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 EMC8O43402 210 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RBMXL2O75526 392 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 BPNT1O95861 308 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 STAG3L2P0CL84 134 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 LAP3P28838 519 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FAM182AQ5T1J6 154 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GALNTL5Q7Z4T8 443 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM145Q8NBT3 493 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CCDC54Q8NEL0 328 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SFT2D1Q8WV19 159 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 USB1Q9BQ65 265 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 OR2S2Q9NQN1 319 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 BACE2Q9Y5Z0 518 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ANKRD61A6NGH8 418 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 C9JVG2 144 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ADH1CP00326 375 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 VIPP01282 170 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 DBIP07108 87 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 AHCYP23526 432 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MASP1P48740 699 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SHC2P98077 582 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms