RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TRIM61Q5EBN2 209 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF667Q5HYK9 610 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PRAMEF17Q5VTA0 474 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GGNBP1Q5YKI7 109 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 IL34Q6ZMJ4 242 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TMPRSS7Q7RTY8 843 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR2W3Q7Z3T1 314 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SZRD1Q7Z422 152 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PARGQ86W56 976 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 XYLT1Q86Y38 959 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SPICQ8N5J4 248 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 FAM86B1Q8N7N1 296 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 BEND2Q8NDZ0 799 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM161BQ8NDZ6 487 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TNFRSF14Q92956 283 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PHYHIPLQ96FC7 376 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 HSH2DQ96JZ2 352 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ADAD1Q96M93 576 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MTERF1Q99551 399 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SLC26A1Q9H2B4 701 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 C1GALT1Q9NS00 363 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 UQCC1Q9NVA1 299 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 C2orf42Q9NWW7 574 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NDUFB11Q9NX14 153 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GPR45Q9Y5Y3 372 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MRPL42Q9Y6G3 142 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 hCG_1809904A0A1W2PP81 198 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 A0A1W2PR64 198 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 A0A1W2PRV1 198 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR5H15A6NDH6 313 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GLTPD2A6NH11 291 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR5H1A6NKK0 313 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 KDELR3O43731 214 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PRAMEF12O95522 483 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CYB5R3P00387 301 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 C1QAP02745 245 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DCNP07585 359 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 USP17L7P0C7H9 530 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACHEP22303 614 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF84P51523 738 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RPL38P63173 70 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CDC42EP1Q00587 391 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 E2F1Q01094 437 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GAGE1Q13065 139 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PLK5Q496M5 336 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ARSJQ5FYB0 599 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GLT8D1Q68CQ7 371 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TSSK4Q6SA08 328 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TTLL10Q6ZVT0 673 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM179BQ7Z7N9 219 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MCEMP1Q8IX19 187 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF619Q8N2I2 560 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 HSD17B11Q8NBQ5 300 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SLC44A5Q8NCS7 719 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CCDC54Q8NEL0 328 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CHST13Q8NET6 341 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SNIP1Q8TAD8 396 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ROBO4Q8WZ75 1007 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 HAVCR1Q96D42 359 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CLCC1Q96S66 551 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 FEVQ99581 238 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MXRA8Q9BRK3 442 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TWSG1Q9GZX9 223 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TCEAL2Q9H3H9 227 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR12D3Q9UGF7 316 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TNFSF13BQ9Y275 285 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SLC35A3Q9Y2D2 325 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NME7Q9Y5B8 376 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DNAJC15Q9Y5T4 150 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNFX1Q9P2E3 1918 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 A0A1B0GUL6 1792 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 MOXD2PA6NHM9 499 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SPDYE2BA6NHP3 402 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 H0YIV9 168 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 GFRA2O00451 464 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 RFXANKO14593 260 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SCGNO76038 276 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF432O94892 652 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CSTAP01040 98 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 GUSBP08236 651 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SPDYE6P0CI01 402 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 S1PR1P21453 382 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 UQCRC2P22695 453 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 S100A7P31151 101 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 NAA10P41227 235 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SLC1A2P43004 574 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 RAP1AP62834 184 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FKBP1AP62942 108 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ATP6V1FQ16864 119 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAM174BQ3ZCQ3 159 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 PYY3Q5JQD4 70 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF678Q5SXM1 525 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 DNLZQ5SXM8 178 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CELF3Q5SZQ8 465 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 OR2A2Q6IF42 318 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 RNF165Q6ZSG1 346 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 LANCL3Q6ZV70 420 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 HS6ST3Q8IZP7 471 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 MYLIPQ8WY64 445 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms