RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZFP90Q8TF47 636 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 CHMP6Q96FZ7 201 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 MARK4Q96L34 752 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 TRNT1Q96Q11 434 aaKnown RBP16.63■□□□□ 0.25
CLN3-259ENST00000637551 DMRTA2Q96SC8 542 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 OR51I1Q9H343 314 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 SERHL2Q9H4I8 314 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 SLC52A3Q9NQ40 469 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 FGFR1OP2Q9NVK5 253 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 CALML5Q9NZT1 146 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 DCTN4Q9UJW0 460 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 CORO2BQ9UQ03 480 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 AHRRA9YTQ3 701 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 GNB5O14775 395 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 KIAA0513O60268 411 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 WISP2O76076 250 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 VIMP08670 466 aaKnown RBP16.62■□□□□ 0.25
CLN3-259ENST00000637551 CELA3AP09093 270 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 BMP2P12643 396 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 CPN1P15169 458 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 ZNF17P17021 662 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 DCTP40126 519 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 CRYZQ08257 329 aaKnown RBP16.62■□□□□ 0.25
CLN3-259ENST00000637551 GNA13Q14344 377 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 FLYWCH1Q4VC44 716 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 COQ5Q5HYK3 327 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 PRAMEF8Q5VWM4 474 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 PRAMEF7Q5VXH5 474 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 FIGNL1Q6PIW4 674 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 XKRXQ6PP77 449 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 ZNF621Q6ZSS3 439 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 CD163Q86VB7 1156 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 IFNEQ86WN2 208 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 ZNF808Q8N4W9 903 aaPredicted RBP16.62■□□□□ 0.25
CLN3-259ENST00000637551 DPP10Q8N608 796 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 OR2M3Q8NG83 312 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 FBXO30Q8TB52 745 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 YIPF4Q9BSR8 244 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 EXO5Q9H790 373 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 LIPGQ9Y5X9 500 aa16.62■□□□□ 0.25
CLN3-259ENST00000637551 FBN2P35556 2912 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 CELSR2Q9HCU4 2923 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 ARHGAP21Q5T5U3 1957 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 HMGN4O00479 90 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 CCL21O00585 134 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TRAPPC6AO75865 159 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 ANP32DO95626 131 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TPOP07202 933 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 HOXB9P17482 250 aaPredicted RBP16.61■□□□□ 0.25
CLN3-259ENST00000637551 ACVR2AP27037 513 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 DPP4P27487 766 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 RFX3P48380 749 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 SMSP52788 366 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 GFRA1P56159 465 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 HPCAP84074 193 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 HSF1Q00613 529 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 ZSWIM7Q19AV6 140 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 GXYLT1Q4G148 440 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 C1QL3Q5VWW1 255 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 CMIPQ8IY22 773 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 METTL25Q8N6Q8 603 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 OR5D16Q8NGK9 328 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 RFWD2Q8NHY2 731 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 C1GALT1C1Q96EU7 318 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 INPP5KQ9BT40 448 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TMEM120AQ9BXJ8 343 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TPT1P8Q9HAU6 139 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TAS2R10Q9NYW0 307 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 CCDC167Q9P0B6 97 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 STOML1Q9UBI4 398 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 TINAGQ9UJW2 476 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 DKKL1Q9UK85 242 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 ACAD8Q9UKU7 415 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 DTNAQ9Y4J8 743 aa16.61■□□□□ 0.25
CLN3-259ENST00000637551 SCO2O43819 266 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 EIF4E2O60573 245 aaKnown RBP16.6■□□□□ 0.25
CLN3-259ENST00000637551 ESRRAP11474 423 aaPredicted RBP16.6■□□□□ 0.25
CLN3-259ENST00000637551 CDKN2CP42773 168 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 ARFIP2P53365 341 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 MVDP53602 400 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 EMC4Q5J8M3 183 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 C6orf10Q5SRN2 563 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 APOOLQ6UXV4 268 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 LRRC74BQ6ZQY2 392 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 FJX1Q86VR8 437 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 RNF130Q86XS8 419 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 DUSP19Q8WTR2 217 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 VPS33AQ96AX1 596 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 ZBTB8AQ96BR9 441 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 ROPN1LQ96C74 230 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 UCN2Q96RP3 112 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 PIGQQ9BRB3 760 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 PAIP1Q9H074 479 aaKnown RBP16.6■□□□□ 0.25
CLN3-259ENST00000637551 SLC6A15Q9H2J7 730 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 SPRR3Q9UBC9 169 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 LEF1Q9UJU2 399 aaPredicted RBP16.6■□□□□ 0.25
CLN3-259ENST00000637551 FBXL2Q9UKC9 423 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 CACNA1CQ13936 2221 aa16.6■□□□□ 0.25
CLN3-259ENST00000637551 CRYBG3Q68DQ2 2970 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 C2CD3Q4AC94 2353 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms