RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 MTFR2Q6P444 385 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 ZNF227Q86WZ6 799 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 C19orf47Q8N9M1 422 aaKnown RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 ANKRD53Q8N9V6 530 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 CENPOQ9BU64 300 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 ZNF576Q9H609 170 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 EPHX3Q9H6B9 360 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 SLC6A20Q9NP91 592 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 HPGDSO60760 199 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 TRIM3O75382 744 aaPredicted RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PRR35P0CG20 571 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 CD40LGP29965 261 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 GPNMBQ14956 572 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PTOV1Q86YD1 416 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PLPP6Q8IY26 295 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 OR8H3Q8N146 312 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 DNAJC22Q8N4W6 341 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 C1orf216Q8TAB5 229 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PITHD1Q9GZP4 211 aaPredicted RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 GPN1Q9HCN4 374 aaPredicted RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 OR6C2Q9NZP2 312 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PADI2Q9Y2J8 665 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 C12orf71A8MTZ7 269 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 SLC19A2O60779 497 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 HOXB3P14651 431 aaPredicted RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 FAUP35544 74 aaKnown RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 SQSTM1Q13501 440 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 PDE7AQ13946 482 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 TBRG1Q3YBR2 411 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 TMEM151BQ8IW70 566 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 MS4A6EQ96DS6 147 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 NEURL3Q96EH8 262 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 ZNF582Q96NG8 517 aaPredicted RBP8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 COMMD9Q9P000 198 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 LCTP09848 1927 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 RALGAPA2Q2PPJ7 1873 aa8.36□□□□□ -1.07
PDLIM5-222ENST00000615540 KCNE1BA0A087WTH5 132 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 SOBPA7XYQ1 873 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 C1QCP02747 245 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PEPDP12955 493 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 NR4A2P43354 598 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 RGS6P49758 472 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 WNT4P56705 351 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 SCRN3Q0VDG4 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 TMEM64Q6YI46 380 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CDRT4Q8N9R6 151 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PJA1Q8NG27 643 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 OR51Q1Q8NH59 317 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 RNASE11Q8TAA1 199 aaKnown RBP8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 HYKKA2RU49 373 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 H7C1C5 153 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 C4BPBP20851 252 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CSNK1EP49674 416 aaKnown RBP8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 LCN6P62502 163 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 MAPK14Q16539 360 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 HSD17B12Q53GQ0 312 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 OR13F1Q8NGS4 319 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 BPIFA2Q96DR5 249 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 RSPRY1Q96DX4 576 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 OR52D1Q9H346 318 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PPP4R1LQ9P1A2 415 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CBLCQ9ULV8 474 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 AP1M2Q9Y6Q5 423 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CASP8AP2Q9UKL3 1982 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 A0A1W2PR48 441 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CASC3O15234 703 aaKnown RBP8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 UPK1BO75841 260 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 AHSA1O95433 338 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CISD3P0C7P0 127 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 ARHGAP11AQ6P4F7 1023 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 ABHD17CQ6PCB6 329 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 AVL9Q8NBF6 648 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 OR6T1Q8NGN1 323 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 OR13C3Q8NGS6 347 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 C4orf36Q96KX1 117 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 NTN4Q9HB63 628 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 SERINC1Q9NRX5 453 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 LRIT1Q9P2V4 623 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 A0A1B0GW55 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 FLRT2O43155 660 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DOK2O60496 412 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L2P0CJ85 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L3P0CJ86 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L4P0CJ87 422 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L5P0CJ88 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L6P0CJ89 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4L7P0CJ90 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 F8A1P23610 371 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 SLC19A1P41440 591 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CTXN1P60606 82 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 HNRNPKP61978 463 aaKnown RBP eCLIP8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 CBLBQ13191 982 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 TRMT12Q53H54 448 aaKnown RBP8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PARP16Q8N5Y8 322 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 TMEM156Q8N614 296 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 TBC1D15Q8TC07 691 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 DUX4Q9UBX2 424 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PSORS1C1Q9UIG5 152 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 VDAC3Q9Y277 283 aa8.35□□□□□ -1.07
PDLIM5-222ENST00000615540 PEX12O00623 359 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms