RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 FJX1Q86VR8 437 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 C10orf111Q8N326 155 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 RPRMLQ8N4K4 120 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 MARVELD2Q8N4S9 558 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 PNPT1Q8TCS8 783 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 DUSP19Q8WTR2 217 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 ZNF524Q96C55 264 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 DSN1Q9H410 356 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 SAR1AQ9NR31 198 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 PNPLA3Q9NST1 481 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 FAM53CQ9NYF3 392 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 SLC6A5Q9Y345 797 aa17.72■□□□□ 0.43
SHKBP1-221ENST00000599833 SETXQ7Z333 2677 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 A0A096LPI6 279 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 TRGV8A0A0C4DH27 118 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 A0A1W2PP18 115 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 NPIPA2E9PIF3 369 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 NPIPA3F8WFD2 350 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 AK1P00568 194 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 ABOP16442 354 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 NCF2P19878 526 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 SRD5A2P31213 254 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 CHI3L1P36222 383 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 KHKP50053 298 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 ADORA2A-AS1P86434 159 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 MAPK14Q16539 360 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 TMEM44Q2T9K0 475 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 DLEU7Q6UYE1 221 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 FRRS1Q6ZNA5 592 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 TRIML2Q8N7C3 387 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 NPAS1Q99742 590 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 NMUR2Q9GZQ4 415 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 IKZF5Q9H5V7 419 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 RUBCNLQ9H714 662 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 RMND5AQ9H871 391 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 TPT1P8Q9HAU6 139 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 MED11Q9P086 117 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 PPP4R1LQ9P1A2 415 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 TRIM33Q9UPN9 1127 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 MEMO1Q9Y316 297 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 PCDHGB3Q9Y5G1 929 aa17.71■□□□□ 0.43
SHKBP1-221ENST00000599833 A0A1B0GUH1 482 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 KIAA0513O60268 411 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 UGT2B17O75795 530 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 TRAPPC6AO75865 159 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 CHRM4P08173 479 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 BMP7P18075 431 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 SEC24CP53992 1094 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 ATP12AP54707 1039 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 C17orf67Q0P5P2 114 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 STX5Q13190 355 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 ZNF141Q15928 474 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 GXYLT1Q4G148 440 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 FLYWCH1Q4VC44 716 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 VASNQ6EMK4 673 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 C3P1Q6ZMU1 363 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 ANKFN1Q8N957 763 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 GATSQ8NAP1 163 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 XAGE5Q8WWM1 108 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 ROPN1LQ96C74 230 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 ZG16BQ96DA0 208 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 CHMP6Q96FZ7 201 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 CCDC120Q96HB5 630 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 PSMG3-AS1Q96PY0 264 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 TIMP4Q99727 224 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 UGT2B28Q9BY64 529 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 TBL1XR1Q9BZK7 514 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 SLC38A1Q9H2H9 487 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 VAPAQ9P0L0 249 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 SH3BGRL2Q9UJC5 107 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 FAM215AQ9Y5M1 114 aa17.7■□□□□ 0.42
SHKBP1-221ENST00000599833 FBP2O00757 339 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 BCKDKO14874 412 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 TNFRSF21O75509 655 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 STX11O75558 287 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 AGFG2O95081 481 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 AGR2O95994 175 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 TPOP07202 933 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 BMP2P12643 396 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 ETFAP13804 333 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 DRD4P21917 467 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 MAGEA8P43361 318 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 RNF144AP50876 292 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 DSCR4P56555 118 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 TXNL4AP83876 142 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 SYPL1Q16563 259 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 C6orf10Q5SRN2 563 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 DPP10Q8N608 796 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 OR5M9Q8NGP3 310 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 SSC4DQ8WTU2 575 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 C1GALT1C1Q96EU7 318 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 PRDM14Q9GZV8 571 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 RABEP2Q9H5N1 569 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 LDAHQ9H6V9 325 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 MKLN1Q9UL63 735 aa17.69■□□□□ 0.42
SHKBP1-221ENST00000599833 KDM4EB2RXH2 506 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-221ENST00000599833 CCL21O00585 134 aa17.68■□□□□ 0.42
SHKBP1-221ENST00000599833 PRRG2O14669 202 aa17.68■□□□□ 0.42
SHKBP1-221ENST00000599833 NDUFB5O43674 189 aa17.68■□□□□ 0.42
SHKBP1-221ENST00000599833 BCAS1O75363 584 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms