RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 VDAC3Q9Y277 283 aa11.77□□□□□ -0.53
LIG1-212ENST00000596549 RAI1Q7Z5J4 1906 aaPredicted RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 NPIPA5A0A0B4J1W7 369 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 A0A1W2PNV4 684 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 A6NNC1 897 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 NPIPA7E9PJI5 369 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 TM9SF1O15321 606 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 NPIPA8P0DM63 369 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 TBXA2RP21731 343 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 BGNP21810 368 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 DNAJA1P31689 397 aaKnown RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 PEX19P40855 299 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 CLK3P49761 638 aaKnown RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 ABCE1P61221 599 aaKnown RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 HBA1P69905 142 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 CEP85LQ5SZL2 805 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 CDC73Q6P1J9 531 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 VWA1Q6PCB0 445 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 CLECL1Q8IZS7 167 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 METTL25Q8N6Q8 603 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 OR5AK3PQ8NH89 298 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 OR5P2Q8WZ92 322 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 SMPDL3BQ92485 455 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 STACQ99469 402 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 PIGQQ9BRB3 760 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 RBM24Q9BX46 236 aaKnown RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 PINK1Q9BXM7 581 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 BHLHE41Q9C0J9 482 aaPredicted RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 LIME1Q9H400 295 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 PIGUQ9H490 435 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 SERHL2Q9H4I8 314 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 NEUROD4Q9HD90 331 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 DUSP22Q9NRW4 184 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 RASSF1Q9NS23 344 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 DNAJB12Q9NXW2 375 aaKnown RBP11.76□□□□□ -0.53
LIG1-212ENST00000596549 HAO1Q9UJM8 370 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 SNX8Q9Y5X2 465 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 KCNE3Q9Y6H6 103 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 HEATR5AQ86XA9 2040 aa11.76□□□□□ -0.53
LIG1-212ENST00000596549 A0A1W2PQD3 144 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 SLC22A20A6NK97 555 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 ESPNB1AK53 854 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 BIRC5O15392 142 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 NDUFB5O43674 189 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 ZNF17P17021 662 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 DDX5P17844 614 aaKnown RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 PRPS1L1P21108 318 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 PSMA4P25789 261 aaKnown RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 CCKARP32238 428 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 RNF144AP50876 292 aaPredicted RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 CLDN8P56748 225 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 POU6F2P78424 691 aaPredicted RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 EMX2Q04743 252 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 TP53BP2Q13625 1128 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 GUSBP1Q15486 140 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 CTU2Q2VPK5 515 aaKnown RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 PLPPR5Q32ZL2 321 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 GLYR1Q49A26 553 aaPredicted RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 DCST2Q5T1A1 773 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.75□□□□□ -0.53
LIG1-212ENST00000596549 CPTPQ5TA50 214 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 MEIOBQ8N635 442 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 OR56A1Q8NGH5 318 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 OR5D16Q8NGK9 328 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 PPP1R14CQ8TAE6 165 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 LINC01560Q8TB33 94 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 SFXN5Q8TD22 340 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 FAM222BQ8WU58 562 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 LRRC46Q96FV0 321 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 SH3YL1Q96HL8 342 aaPredicted RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 DUSP26Q9BV47 211 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 BTBD2Q9BX70 525 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 POLDIP3Q9BY77 421 aaKnown RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 CLEC4MQ9H2X3 399 aaPredicted RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 ACBD3Q9H3P7 528 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 AKTIPQ9H8T0 292 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 RNF122Q9H9V4 155 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 ATAD3AQ9NVI7 634 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 GIN1Q9NXP7 522 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 NOP53Q9NZM5 478 aaKnown RBP11.75□□□□□ -0.53
LIG1-212ENST00000596549 PACSIN3Q9UKS6 424 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 RAP2CQ9Y3L5 183 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 ACTL7BQ9Y614 415 aa11.75□□□□□ -0.53
LIG1-212ENST00000596549 TUBAL3A6NHL2 446 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 A8MXE2 369 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 ANKRD28O15084 1053 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 OIP5O43482 229 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 LCN1P31025 176 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 SOAT1P35610 550 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 SLC1A6P48664 564 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 CCT3P49368 545 aaKnown RBP11.74□□□□□ -0.53
LIG1-212ENST00000596549 RPS26P62854 115 aaKnown RBP11.74□□□□□ -0.53
LIG1-212ENST00000596549 ZNF117Q03924 483 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 MAD2L1Q13257 205 aaPredicted RBP11.74□□□□□ -0.53
LIG1-212ENST00000596549 PON3Q15166 354 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 SMU1Q2TAY7 513 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 OR4F3Q6IEY1 312 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 P4HA3Q7Z4N8 544 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 CLEC4FQ8N1N0 589 aa11.74□□□□□ -0.53
LIG1-212ENST00000596549 GOT1L1Q8NHS2 421 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms