RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TMEM81Q6P7N7 255 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 NPSR1Q6W5P4 371 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 KIF18BQ86Y91 864 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 GCNT2Q8N0V5 402 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 MS4A4EQ96PG1 132 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 G6PC3Q9BUM1 346 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 RBM24Q9BX46 236 aaKnown RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 PLEKHF2Q9H8W4 249 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 TCF7L2Q9NQB0 619 aa11.32□□□□□ -0.6
UPF1-203ENST00000594504 SIRT3Q9NTG7 399 aaPredicted RBP11.32□□□□□ -0.6
UPF1-203ENST00000594504 CCDC168Q8NDH2 2452 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 PRAMEF25A6NGN4 478 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 CLCA1A8K7I4 914 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 ABCB7O75027 752 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 RCBTB2O95199 551 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 C6orf47O95873 294 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 RAF1P04049 648 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 IDH3AP50213 366 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 UFM1P61960 85 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 PSG6Q00889 435 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 KEAP1Q14145 624 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 DEFB113Q30KQ7 82 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 FAM174BQ3ZCQ3 159 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 VPS26BQ4G0F5 336 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 CYP27C1Q4G0S4 372 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 OR4F3Q6IEY1 312 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 PAMR1Q6UXH9 720 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 Q71RC1 249 aaPredicted RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 SZRD1Q7Z422 152 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 ADGRE4PQ86SQ3 457 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 PLCZ1Q86YW0 608 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 SLC44A2Q8IWA5 706 aaPredicted RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 GLB1L3Q8NCI6 653 aaPredicted RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 WFDC11Q8NEX6 87 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 VPS37AQ8NEZ2 397 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 NUP43Q8NFH3 380 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 OR4N2Q8NGD1 307 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 STON2Q8WXE9 905 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 MOAP1Q96BY2 351 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 FAM120BQ96EK7 910 aaKnown RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 TEX37Q96LM6 180 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 ALPK1Q96QP1 1244 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 ADOQ96SZ5 270 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 ZBTB18Q99592 522 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 SMR3AQ99954 134 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 YIPF4Q9BSR8 244 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 LMF2Q9BU23 707 aaKnown RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 CCDC28BQ9BUN5 200 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 OR2B2Q9GZK3 357 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 Q9N2J8 555 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 EQTNQ9NQ60 294 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 DLL4Q9NR61 685 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 SDR39U1Q9NRG7 319 aaPredicted RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 ZCCHC3Q9NUD5 404 aaKnown RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 GALNT8Q9NY28 637 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 RPH3AQ9Y2J0 694 aaPredicted RBP11.31□□□□□ -0.6
UPF1-203ENST00000594504 OR10H1Q9Y4A9 318 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 SNX8Q9Y5X2 465 aa11.31□□□□□ -0.6
UPF1-203ENST00000594504 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 PRSS51A0A1B0GVH4 220 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 OR6C70A6NIJ9 312 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 DYNC1I1O14576 645 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 CFLARO15519 480 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 ZIC3O60481 467 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 TSPAN2O60636 221 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 IL18BPO95998 194 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 S100A3P33764 101 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 KRT20P35900 424 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 CCT3P49368 545 aaKnown RBP11.3□□□□□ -0.6
UPF1-203ENST00000594504 LHX2P50458 406 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 PRKAG1P54619 331 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 GFRA1P56159 465 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 NME5P56597 212 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 HBA1P69905 142 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MRPS22P82650 360 aaKnown RBP11.3□□□□□ -0.6
UPF1-203ENST00000594504 SNTA1Q13424 505 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 KRTAP21-3Q3LHN1 58 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SPDYE7PQ495Y7 208 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SPANXN4Q5MJ08 99 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MFSD12Q6NUT3 480 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 ZCCHC12Q6PEW1 402 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 BHLHB9Q6PI77 547 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 ENPP6Q6UWR7 440 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 CDRT4Q8N9R6 151 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 OR56A1Q8NGH5 318 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SFXN5Q8TD22 340 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 HOXB13Q92826 284 aaPredicted RBP11.3□□□□□ -0.6
UPF1-203ENST00000594504 TMCO6Q96DC7 493 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MBD6Q96DN6 1003 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 GIMAP5Q96F15 307 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SLC35A4Q96G79 324 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MARK4Q96L34 752 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 COL21A1Q96P44 957 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 EBF4Q9BQW3 602 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SIKE1Q9BRV8 207 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 CXorf36Q9H7Y0 433 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 FAM120CQ9NX05 1096 aaKnown RBP11.3□□□□□ -0.6
UPF1-203ENST00000594504 TAS2R10Q9NYW0 307 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 ZIM2Q9NZV7 527 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MRTO4Q9UKD2 239 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms