RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KLHL26Q53HC5 615 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 EMC4Q5J8M3 183 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 VASNQ6EMK4 673 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 TNFAIP8L2Q6P589 184 aaPredicted RBP13.66□□□□□ -0.22
UPF1-202ENST00000594243 AAGABQ6PD74 315 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 RPTNQ6XPR3 784 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 C3P1Q6ZMU1 363 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 IFNEQ86WN2 208 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 RNF130Q86XS8 419 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ZFP90Q8TF47 636 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 GTF2H4Q92759 462 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 RAB8BQ92930 207 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ABTB1Q969K4 478 aaPredicted RBP13.66□□□□□ -0.22
UPF1-202ENST00000594243 SPDL1Q96EA4 605 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 PSMG3-AS1Q96PY0 264 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 TMEM120AQ9BXJ8 343 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 POLE3Q9NRF9 147 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ALKBH4Q9NXW9 302 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 TNFRSF10DQ9UBN6 386 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 LIPT1Q9Y234 373 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 SLC6A5Q9Y345 797 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 HRH3Q9Y5N1 445 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ESPL1Q14674 2120 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 USP9XQ93008 2570 aaPredicted RBP13.65□□□□□ -0.22
UPF1-202ENST00000594243 AHRRA9YTQ3 701 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 HMGN4O00479 90 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 NR5A2O00482 541 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 ZIC3O60481 467 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 ZG16O60844 167 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 HK1P19367 917 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 CHMP24386 653 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 ACVR2AP27037 513 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 PTGER4P35408 488 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 CRYZQ08257 329 aaKnown RBP13.65□□□□□ -0.22
UPF1-202ENST00000594243 GPR68Q15743 365 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 GLYR1Q49A26 553 aaPredicted RBP13.65□□□□□ -0.22
UPF1-202ENST00000594243 AP1ARQ63HQ0 302 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 XKRXQ6PP77 449 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 SLC2A7Q6PXP3 512 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 ENPP6Q6UWR7 440 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 PHOSPHO1Q8TCT1 267 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 OIT3Q8WWZ8 545 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 ROPN1LQ96C74 230 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 DMRTA2Q96SC8 542 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 UGT2B28Q9BY64 529 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 NMUR2Q9GZQ4 415 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 TPT1P8Q9HAU6 139 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 DTNAQ9Y4J8 743 aa13.65□□□□□ -0.22
UPF1-202ENST00000594243 NINQ8N4C6 2090 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 A0A1W2PP18 115 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 CYSRT1A8MQ03 144 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 LINC01387J3KSC0 135 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 GTPBP1O00178 669 aaKnown RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 FCMRO60667 390 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 RNF224P0DH78 156 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 AGAP20933 346 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 GFRA1P56159 465 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 HPCAP84074 193 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 ZNF630Q2M218 657 aaPredicted RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 GPAT3Q53EU6 434 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 DNAJC14Q6Y2X3 702 aaPredicted RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 B3GNT6Q6ZMB0 384 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 MRGPRGQ86SM5 289 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 ZNF808Q8N4W9 903 aaPredicted RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 GATSQ8NAP1 163 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 PNPT1Q8TCS8 783 aaKnown RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 TSPEARQ8WU66 669 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 C1GALT1C1Q96EU7 318 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 SFXN2Q96NB2 322 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 PRDM14Q9GZV8 571 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 ZNF350Q9GZX5 532 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 PAIP1Q9H074 479 aaKnown RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 SAP130Q9H0E3 1048 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 RAD21L1Q9H4I0 556 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 ZNF385DQ9H6B1 395 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 SLC52A3Q9NQ40 469 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 SLC6A13Q9NSD5 602 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 THUMPD1Q9NXG2 353 aaKnown RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 COQ3Q9NZJ6 369 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 KLHL14Q9P2G3 628 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 MKLN1Q9UL63 735 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 RPH3AQ9Y2J0 694 aaPredicted RBP13.64□□□□□ -0.23
UPF1-202ENST00000594243 WDR45Q9Y484 360 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 PCDHB14Q9Y5E9 798 aa13.64□□□□□ -0.23
UPF1-202ENST00000594243 PRRC2CQ9Y520 2896 aaKnown RBP13.63□□□□□ -0.23
UPF1-202ENST00000594243 A0A087WZY1 265 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 A0A096LPI6 279 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 NPIPA5A0A0B4J1W7 369 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 C17orf51A8MQB3 221 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 B4DXG7 233 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 FAM47E-STBD1D6RA91 191 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 NPIPA7E9PJI5 369 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 NPIPB9F8W1W9 429 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 CLIC1O00299 241 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 UGT2B17O75795 530 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 NPIPA8P0DM63 369 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 CPN1P15169 458 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 CAPN3P20807 821 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 CRATP43155 626 aa13.63□□□□□ -0.23
UPF1-202ENST00000594243 ADORA2A-AS1P86434 159 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms