RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 OR10D3Q8NH80 312 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 ACMSDQ8TDX5 336 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 CCDC126Q96EE4 140 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 PLPPR2Q96GM1 343 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 USB1Q9BQ65 265 aaKnown RBP12.52□□□□□ -0.41
VMP1-209ENST00000588915 EBPLQ9BY08 206 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 SNX8Q9Y5X2 465 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 COL6A5A8TX70 2615 aa12.52□□□□□ -0.41
VMP1-209ENST00000588915 EXOC1LA0A1B0GW35 172 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 NDUFB5O43674 189 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 RSL1D1O76021 490 aaKnown RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 ABHD2P08910 425 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 PSMA4P25789 261 aaKnown RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 SLC6A8P48029 635 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 CAPRIN1Q14444 709 aaKnown RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 IMPG1Q17R60 797 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 CTU2Q2VPK5 515 aaKnown RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 GRAMD1BQ3KR37 738 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 GLE1Q53GS7 698 aaKnown RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 FAM219BQ5XKK7 198 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 HEPHL1Q6MZM0 1159 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 DNAJC14Q6Y2X3 702 aaPredicted RBP12.51□□□□□ -0.41
VMP1-209ENST00000588915 MISPQ8IVT2 679 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 CDRT4Q8N9R6 151 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 STEAP2Q8NFT2 490 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 OR6Y1Q8NGX8 325 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 OR2V1Q8NHB1 315 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 FAM110BQ8TC76 370 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 GPR151Q8TDV0 419 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 KCNA7Q96RP8 456 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 ACTR6Q9GZN1 396 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 GSTO2Q9H4Y5 243 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 NGBQ9NPG2 151 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 NTMQ9P121 344 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 VDAC3Q9Y277 283 aa12.51□□□□□ -0.41
VMP1-209ENST00000588915 RTTNQ86VV8 2226 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 ATRQ13535 2644 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 NPIPB8E9PQR5 432 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 HSPA4LO95757 839 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 TUBBP07437 444 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 PRPH2P23942 346 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 ECHS1P30084 290 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 IDUAP35475 653 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 RFX3P48380 749 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 TNK1Q13470 666 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 WHAMMP3Q1A5X7 153 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 NOXRED1Q6NXP6 359 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 ZCCHC12Q6PEW1 402 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 GALNT10Q86SR1 603 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 TRABD2AQ86V40 505 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 CDC26Q8NHZ8 85 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 IFT81Q8WYA0 676 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 TRMT61AQ96FX7 289 aaKnown RBP12.5□□□□□ -0.41
VMP1-209ENST00000588915 GP6Q9HCN6 339 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 MID1IP1Q9NPA3 183 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 RRAGDQ9NQL2 400 aaPredicted RBP12.5□□□□□ -0.41
VMP1-209ENST00000588915 DCDC2Q9UHG0 476 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 ADAM21Q9UKJ8 722 aa12.5□□□□□ -0.41
VMP1-209ENST00000588915 A0A1W2PRB8 838 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 GXYLT2A0PJZ3 443 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 OVOL3O00110 214 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 CXCL13O43927 109 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 TBX19O60806 448 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 OXSR1O95747 527 aaPredicted RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 PLAUP00749 431 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 IGKV1D-16P01601 117 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 ME2P23368 584 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 ADH6P28332 368 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 GCAP28676 217 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 EIF1P41567 113 aaKnown RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 RPS4XP62701 263 aaKnown RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 KIAA0040Q15053 153 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 PPP4R4Q6NUP7 873 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 WFDC8Q8IUA0 241 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 HOMEZQ8IX15 550 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 OR4C3Q8NH37 302 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 ZFP28Q8NHY6 868 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 PIK3R3Q92569 461 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 AKAP1Q92667 903 aaKnown RBP eCLIP12.49□□□□□ -0.41
VMP1-209ENST00000588915 TACO1Q9BSH4 297 aaKnown RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 ESRP2Q9H6T0 727 aaKnown RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 TIGARQ9NQ88 270 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 UBQLN4Q9NRR5 601 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 MED17Q9NVC6 651 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 CLEC4AQ9UMR7 237 aa12.49□□□□□ -0.41
VMP1-209ENST00000588915 POLR3HQ9Y535 204 aaPredicted RBP12.49□□□□□ -0.41
VMP1-209ENST00000588915 A0A0J9YW62 118 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 A0A1W2PQD3 144 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 SHISA8B8ZZ34 492 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 UBFD1O14562 309 aaKnown RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 PDPK1O15530 556 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 NID1P14543 1247 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 AGTR1P30556 359 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 FRKP42685 505 aaPredicted RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 SERPINB4P48594 390 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 ZNF41P51814 821 aaPredicted RBP12.48□□□□□ -0.41
VMP1-209ENST00000588915 FOXA1P55317 472 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 CARD18P57730 90 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 SLC18A2Q05940 514 aa12.48□□□□□ -0.41
VMP1-209ENST00000588915 KRTAP1-1Q07627 177 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms