RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SNAPC3Q92966 411 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 ULK4Q96C45 1275 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 OMA1Q96E52 524 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 LINGO1Q96FE5 620 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 FCRL1Q96LA6 429 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 HYLS1Q96M11 299 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 GPR137Q96N19 417 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 SERPINB11Q96P15 392 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 OPALINQ96PE5 141 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NEDD4LQ96PU5 975 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 FYTTD1Q96QD9 318 aaKnown RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 VPS35Q96QK1 796 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 MCCC1Q96RQ3 725 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 SMOQ99835 787 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 MAPKAP1Q9BPZ7 522 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 TREX2Q9BQ50 279 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 WDR77Q9BQA1 342 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 MED18Q9BUE0 208 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 ACAT2Q9BWD1 397 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 C1QTNF7Q9BXJ2 289 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 UCK2Q9BZX2 261 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 POLR1EQ9GZS1 481 aaKnown RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 SIK2Q9H0K1 926 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 TSPAN10Q9H1Z9 355 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 OR51E2Q9H255 320 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 TNKS2Q9H2K2 1166 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 PIGUQ9H490 435 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 FBXO44Q9H4M3 255 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 RETREG1Q9H6L5 497 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NARFLQ9H6Q4 476 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 SP110Q9HB58 689 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 LRTM1Q9HBL6 345 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NT5MQ9NPB1 228 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 LHX9Q9NQ69 397 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 TIGARQ9NQ88 270 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 SERHLQ9NQF3 203 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NLE1Q9NVX2 485 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 TMEM248Q9NWD8 314 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 C14orf119Q9NWQ9 140 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NDUFB11Q9NX14 153 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 ERVK13-1Q9NX77 482 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 GLTPQ9NZD2 209 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 CD274Q9NZQ7 290 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 MPP6Q9NZW5 540 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 SH3BP4Q9P0V3 963 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 NUFIP1Q9UHK0 495 aaKnown RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 MOSPD1Q9UJG1 213 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 TINAGQ9UJW2 476 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 PADI1Q9ULC6 663 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.88□□□□□ -1.79
LIG3-211ENST00000588713 CRYL1Q9Y2S2 319 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 MED16Q9Y2X0 877 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 CCL27Q9Y4X3 112 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 KCNE2Q9Y6J6 123 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 U3KQV3 271 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 FER1L5A0AVI2 2057 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 SVEP1Q4LDE5 3571 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 IGLON5A6NGN9 336 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR51F1A6NGY5 319 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR6C70A6NIJ9 312 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 DRGXA6NNA5 263 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 FAM90A27PA6NNH2 459 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MYO1GB0I1T2 1018 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 C21orf140B9A014 251 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 E5RI56 91 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 H7C0S8 307 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 hCG_2039718K7EN88 272 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SGK494L7N484 410 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CDC7O00311 574 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 QSOX1O00391 747 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR7A17O14581 309 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 PCDH17O14917 1159 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MYL12BO14950 172 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SMAD6O43541 496 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 ORC5O43913 435 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TPST2O60704 377 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 PAGE1O75459 146 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 NDUFS3O75489 264 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SERPINI2O75830 405 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RGS9O75916 674 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR7A10O76100 309 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TPOP07202 933 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SRPRAP08240 638 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 CSF3P09919 207 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 GAAP10253 952 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 PSKH1P11801 424 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 PKMP14618 531 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 EGR1P18146 543 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MYL12AP19105 171 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 HK1P19367 917 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MAGP20916 626 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZP3P21754 424 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 LPOP22079 712 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 PRKACGP22612 351 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 AZGP1P25311 298 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 PTPN6P29350 595 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 UQCRC1P31930 480 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 S100A3P33764 101 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 IGFALSP35858 605 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TSFMP43897 325 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms