RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 GANABQ14697 944 aaKnown RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 KLHL26Q53HC5 615 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 XKRXQ6PP77 449 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 BLOC1S3Q6QNY0 202 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 ZNF621Q6ZSS3 439 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 MAMDC2Q7Z304 686 aaPredicted RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 MISPQ8IVT2 679 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 ABTB1Q969K4 478 aaPredicted RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 VPS33AQ96AX1 596 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 THOC1Q96FV9 657 aaKnown RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 WDYHV1Q96HA8 205 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 CCDC134Q9H6E4 229 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 PTGES2Q9H7Z7 377 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 RMND5AQ9H871 391 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 NPHS2Q9NP85 383 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 EXD2Q9NVH0 621 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 PLEKHB1Q9UF11 243 aaPredicted RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 DCTN4Q9UJW0 460 aa17.54■□□□□ 0.4
SS18-208ENST00000577751 SPTAN1Q13813 2472 aaKnown RBP17.54■□□□□ 0.4
SS18-208ENST00000577751 A1L4Q6 167 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 AHRRA9YTQ3 701 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 OR12D1P0DN82 309 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 GP1BBP13224 206 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 CPN1P15169 458 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 HPGDP15428 266 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 CHMP24386 653 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 PTGER4P35408 488 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 DCTP40126 519 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 ATP12AP54707 1039 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 B3GALT5-AS1P59052 145 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 TIGD2Q4W5G0 525 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 DCST1Q5T197 706 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 TNFAIP8L2Q6P589 184 aaPredicted RBP17.53■□□□□ 0.4
SS18-208ENST00000577751 IFNEQ86WN2 208 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 PM20D2Q8IYS1 436 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 ULK2Q8IYT8 1036 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 ZFP90Q8TF47 636 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 XAGE5Q8WWM1 108 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 ITCHQ96J02 903 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 TTYH2Q9BSA4 534 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 ZNF350Q9GZX5 532 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 SLC52A3Q9NQ40 469 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 DKKL1Q9UK85 242 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 SPTBN1Q01082 2364 aaKnown RBP17.53■□□□□ 0.4
SS18-208ENST00000577751 MED12Q93074 2177 aa17.53■□□□□ 0.4
SS18-208ENST00000577751 NPIPA5A0A0B4J1W7 369 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 PRAMEF27A3QJZ7 478 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 NPIPA7E9PJI5 369 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 HMGN4O00479 90 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 FCMRO60667 390 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 STX11O75558 287 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 NPIPA8P0DM63 369 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 MSX1P28360 303 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 TXNL4AP83876 142 aaKnown RBP17.52■□□□□ 0.4
SS18-208ENST00000577751 GUCY1A3Q02108 690 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 FUT5Q11128 374 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 ART3Q13508 389 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 CD226Q15762 336 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 GLYR1Q49A26 553 aaPredicted RBP17.52■□□□□ 0.4
SS18-208ENST00000577751 FLYWCH1Q4VC44 716 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.52■□□□□ 0.4
SS18-208ENST00000577751 C1orf185Q5T7R7 199 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 B3GNT6Q6ZMB0 384 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 MTERF4Q7Z6M4 381 aaKnown RBP17.52■□□□□ 0.4
SS18-208ENST00000577751 RNF130Q86XS8 419 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 GATSQ8NAP1 163 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 ZNF527Q8NB42 609 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 GTF2H4Q92759 462 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 RAB8BQ92930 207 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 C1GALT1C1Q96EU7 318 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 NMUR2Q9GZQ4 415 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 ZNF385DQ9H6B1 395 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 ALKBH4Q9NXW9 302 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 CCDC167Q9P0B6 97 aa17.52■□□□□ 0.4
SS18-208ENST00000577751 HECTD1Q9ULT8 2610 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 GLI4P10075 376 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 GCKP35557 465 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 MAGEA8P43361 318 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 KHKP50053 298 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 MVDP53602 400 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 NUP107P57740 925 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 PMPCAQ10713 525 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 SQLEQ14534 574 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 CDSNQ15517 529 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 ZNF141Q15928 474 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 ATAD3BQ5T9A4 648 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 AAGABQ6PD74 315 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 ENPP6Q6UWR7 440 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 C16orf62Q7Z3J2 963 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 RND1Q92730 232 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 SFXN2Q96NB2 322 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 SAP130Q9H0E3 1048 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 POLE3Q9NRF9 147 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 KCNE5Q9UJ90 142 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 RPH3AQ9Y2J0 694 aaPredicted RBP17.51■□□□□ 0.39
SS18-208ENST00000577751 DTNAQ9Y4J8 743 aa17.51■□□□□ 0.39
SS18-208ENST00000577751 FLNBO75369 2602 aaKnown RBP17.51■□□□□ 0.39
SS18-208ENST00000577751 A0A0G2JND7 137 aa17.5■□□□□ 0.39
SS18-208ENST00000577751 KRT75O95678 551 aa17.5■□□□□ 0.39
SS18-208ENST00000577751 EPPINO95925 133 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms