RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CLUP10909 449 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 PDX1P52945 283 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 ZNF322Q6U7Q0 402 aaPredicted RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 TCTE3Q8IZS6 198 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 OR10G6Q8NH81 332 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 CNRIP1Q96F85 164 aaPredicted RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 PPP1R16AQ96I34 528 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 C4orf36Q96KX1 117 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 OR52D1Q9H346 318 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 PPP1R3EQ9H7J1 279 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 KRCC1Q9NPI7 259 aaPredicted RBP13.55□□□□□ -0.24
VPS35-210ENST00000568784 RDH8Q9NYR8 311 aa13.55□□□□□ -0.24
VPS35-210ENST00000568784 TRPM6Q9BX84 2022 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 A0A1W2PR48 441 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 CSF2RAP15509 400 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 STX4Q12846 297 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 PXDC1Q5TGL8 231 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 REM2Q8IYK8 340 aaPredicted RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR4E2Q8NGC2 313 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 DNAJA3Q96EY1 480 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 FOLH1BQ9HBA9 442 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 BABAM2Q9NXR7 383 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 ICKQ9UPZ9 632 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 TMEM5Q9Y2B1 443 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 STK25O00506 426 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 NUPL2O15504 423 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 KHDRBS3O75525 346 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 CTSAP10619 480 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 PRKACBP22694 351 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 SNTB2Q13425 540 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 SLC25A35Q3KQZ1 300 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 C12orf40Q86WS4 652 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 C10orf53Q8N6V4 93 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR6K6Q8NGW6 343 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 C19orf43Q9BQ61 176 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 SAGE1Q9NXZ1 904 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR6C2Q9NZP2 312 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 E9PI62 339 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 SMAD9O15198 467 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 GATBO75879 557 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 TP53P04637 393 aaPredicted RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 RPL4P36578 427 aaKnown RBP13.54□□□□□ -0.24
VPS35-210ENST00000568784 LIMK1P53667 647 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR12D2P58182 307 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 E2F1Q01094 437 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 DUSP2Q05923 314 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 ODF4Q2M2E3 257 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 HYAL4Q2M3T9 481 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 NATD1Q8N6N6 113 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 MORN4Q8NDC4 146 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR56A1Q8NGH5 318 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR4C6Q8NH72 309 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 OR10A4Q9H209 315 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 UBQLN3Q9H347 655 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 NANSQ9NR45 359 aa13.54□□□□□ -0.24
VPS35-210ENST00000568784 A0A0G2JPF8 293 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 RIIAD1A6NNX1 92 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 HNRNPCL3B7ZW38 293 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 MID1O15344 667 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 HNRNPCL4P0DMR1 293 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 CXCL3P19876 107 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 AGFG1P52594 562 aaKnown RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 CSNK1G2P78368 415 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 DGCR2P98153 550 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 DEFB134Q4QY38 66 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 SLC25A25Q6KCM7 469 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 C12orf76Q8N812 135 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 SNX33Q8WV41 574 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 ACOT11Q8WXI4 607 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 ZMYND19Q96E35 227 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 PINK1Q9BXM7 581 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 NARFLQ9H6Q4 476 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 POM121CA8CG34 1229 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 CHURC1-FNTBB4DL54 471 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 SLC31A1O15431 190 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 STX11O75558 287 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 CLDN12P56749 244 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 TSPAN5P62079 268 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 CRYZQ08257 329 aaKnown RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 AGERQ15109 404 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 TOR2AQ5JU69 321 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 SFXN4Q6P4A7 337 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 SIAH3Q8IW03 269 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 FTMTQ8N4E7 242 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 MED30Q96HR3 178 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 RBCK1Q9BYM8 510 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 DPEP2Q9H4A9 486 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 GTF2A1LQ9UNN4 478 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 SF3B6Q9Y3B4 125 aaKnown RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 SIRT4Q9Y6E7 314 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 SEC16AO15027 2179 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 ABHD14A-ACY1A0A1B0GW23 586 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 PRRT4C9JH25 899 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 E9PQ18 207 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 CDC42EP2O14613 210 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 EMC8O43402 210 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 FZD7O75084 574 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 MT-ND5P03915 603 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 NT5EP21589 574 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms