RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LDAHQ9H6V9 325 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 TPT1P8Q9HAU6 139 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 SAR1AQ9NR31 198 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.74■□□□□ 0.11
CLN3-217ENST00000565354 SH3BGRL2Q9UJC5 107 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 PCDHB14Q9Y5E9 798 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 STX11O75558 287 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 TRAPPC6AO75865 159 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 PDE9AO76083 593 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 GLSO94925 669 aaPredicted RBP15.73■□□□□ 0.11
CLN3-217ENST00000565354 AGAP20933 346 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 ADSLP30566 484 aaPredicted RBP15.73■□□□□ 0.11
CLN3-217ENST00000565354 PTGDSP41222 190 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 KRTAP10-9P60411 292 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 SLC10A1Q14973 349 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 ARHGAP11BQ3KRB8 267 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 CDH24Q86UP0 819 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 SIAH3Q8IW03 269 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 ZNF614Q8N883 585 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 ZNF527Q8NB42 609 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 OR4K17Q8NGC6 315 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 OR52N2Q8NGI0 321 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 AURKBQ96GD4 344 aaPredicted RBP15.73■□□□□ 0.11
CLN3-217ENST00000565354 NMUR2Q9GZQ4 415 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 HOXD1Q9GZZ0 328 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 UBQLN4Q9NRR5 601 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 SLC6A13Q9NSD5 602 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 FBXO34Q9NWN3 711 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 FLRT3Q9NZU0 649 aa15.73■□□□□ 0.11
CLN3-217ENST00000565354 TMEM247A6NEH6 219 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 LRRC3CA6NJW4 275 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 CLIC1O00299 241 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 SNPHO15079 494 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 SNX3O60493 162 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 OXSR1O95747 527 aaPredicted RBP15.72■□□□□ 0.11
CLN3-217ENST00000565354 PPIBP23284 216 aaKnown RBP15.72■□□□□ 0.11
CLN3-217ENST00000565354 ADORA2A-AS1P86434 159 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 GTF3C1Q12789 2109 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 NFYCQ13952 458 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 GPR68Q15743 365 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 HYAL4Q2M3T9 481 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLN3-217ENST00000565354 TIGD3Q6B0B8 471 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 ZAR1Q86SH2 424 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 DHDDSQ86SQ9 333 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 MARCH3Q86UD3 253 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 PLCZ1Q86YW0 608 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 CHDHQ8NE62 594 aaPredicted RBP15.72■□□□□ 0.11
CLN3-217ENST00000565354 POM121Q96HA1 1249 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 GNRHR2Q96P88 292 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 SDF2Q99470 211 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 ZNF703Q9H7S9 590 aaPredicted RBP15.72■□□□□ 0.11
CLN3-217ENST00000565354 HHATLQ9HCP6 504 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 QPCTLQ9NXS2 382 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 C15orf41Q9Y2V0 281 aa15.72■□□□□ 0.11
CLN3-217ENST00000565354 NPIPA5A0A0B4J1W7 369 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 EVPLLA8MZ36 301 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 NPIPA7E9PJI5 369 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 H3BNH8 94 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 C19orf84I3L1E1 186 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 HMGN4O00479 90 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 SLC22A2O15244 555 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 NDUFB5O43674 189 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 FADS1O60427 444 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 ANGPTL1O95841 491 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 RFPL3SP0C7P2 107 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 NPIPA8P0DM63 369 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 NR2F1P10589 423 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 ABOP16442 354 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 TBXA2RP21731 343 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 MAGEA8P43361 318 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 CASP6P55212 293 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 DSTNP60981 165 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 CMPK2Q5EBM0 449 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 COX20Q5RI15 118 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 LRIF1Q5T3J3 769 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 OR5M10Q6IEU7 315 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 GATSQ8NAP1 163 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 OR4C3Q8NH37 302 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 ROPN1LQ96C74 230 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 C14orf79Q96F83 325 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 SLC52A3Q9NQ40 469 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 ARMCX1Q9P291 453 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 P2RX2Q9UBL9 471 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 DKKL1Q9UK85 242 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 CORO2BQ9UQ03 480 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 LIPT1Q9Y234 373 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 WDR45Q9Y484 360 aa15.71■□□□□ 0.11
CLN3-217ENST00000565354 ANKHD1Q8IWZ3 2542 aaKnown RBP15.71■□□□□ 0.11
CLN3-217ENST00000565354 MAP1AP78559 2803 aaPredicted RBP15.7■□□□□ 0.1
CLN3-217ENST00000565354 LOC100653049A0A140TA62 436 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 BBIP1A8MTZ0 92 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 SLC19A2O60779 497 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 CBR3O75828 277 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 KRT34O76011 436 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 C1QCP02747 245 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 NGFRP08138 427 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 ETFAP13804 333 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 CD1EP15812 388 aa15.7■□□□□ 0.1
CLN3-217ENST00000565354 PTPN6P29350 595 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms