RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 HEATR5AQ86XA9 2040 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 SETD2Q9BYW2 2564 aaPredicted RBP12.16□□□□□ -0.46
CLK3-216ENST00000564468 IGLV3-32A0A0A0MS00 114 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 A0A1W2PQD3 144 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 HSPB2A8KAH6 182 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 H3BNH8 94 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 UBDO15205 165 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 SCN2BO60939 215 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 SLC22A3O75751 556 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 CPSF4O95639 269 aaKnown RBP12.16□□□□□ -0.46
CLK3-216ENST00000564468 IL6P05231 212 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 HK1P19367 917 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 GFRA1P56159 465 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 UFM1P61960 85 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 HSPB2Q16082 182 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 SLC9B1Q4ZJI4 515 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 PDCD4Q53EL6 469 aaKnown RBP12.16□□□□□ -0.46
CLK3-216ENST00000564468 DCST2Q5T1A1 773 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 RTL6Q6ICC9 239 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 MTERF4Q7Z6M4 381 aaKnown RBP12.16□□□□□ -0.46
CLK3-216ENST00000564468 CLECL1Q8IZS7 167 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 RPRMLQ8N4K4 120 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 OR4C3Q8NH37 302 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 ZPLD1Q8TCW7 415 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 WDYHV1Q96HA8 205 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 OR7D2Q96RA2 312 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 PIGQQ9BRB3 760 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 CALHM2Q9HA72 323 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 KCNJ16Q9NPI9 418 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 FLRT3Q9NZU0 649 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 ZIM2Q9NZV7 527 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 MED11Q9P086 117 aa12.16□□□□□ -0.46
CLK3-216ENST00000564468 CD8B2A6NJW9 211 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 POLR3GO15318 223 aaPredicted RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 ZIC3O60481 467 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 DIAPH2O60879 1101 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 IL2RAP01589 272 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 PGRP06401 933 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 PEPDP12955 493 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 COX6B1P14854 86 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 TIMP3P35625 211 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 CHI3L1P36222 383 aaPredicted RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 ANXA11P50995 505 aaKnown RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 NME5P56597 212 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 EEFSECP57772 596 aaKnown RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 TXNL4AP83876 142 aaKnown RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 BCL2A1Q16548 175 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 ACSF3Q4G176 576 aaPredicted RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 CCNJQ5T5M9 372 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 ATAD3BQ5T9A4 648 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 NSUN5P2Q63ZY6 315 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 EPGNQ6UW88 154 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 CHMP1BQ7LBR1 199 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 ANKRD46Q86W74 232 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 MIPOL1Q8TD10 442 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 C1GALT1C1Q96EU7 318 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 OTUB1Q96FW1 271 aaPredicted RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 CCDC115Q96NT0 180 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 OR52E6Q96RD3 313 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 PANX1Q96RD7 426 aa12.15□□□□□ -0.46
CLK3-216ENST00000564468 RPH3AQ9Y2J0 694 aaPredicted RBP12.15□□□□□ -0.46
CLK3-216ENST00000564468 ADGRG4Q8IZF6 3080 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 A0A087WZY1 265 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 H0Y3Z8 333 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 ZNF195O14628 629 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 ATP12AP54707 1039 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 STX1BP61266 288 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 PHC1P78364 1004 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 IRX1P78414 480 aaPredicted RBP12.14□□□□□ -0.47
CLK3-216ENST00000564468 SLC25A35Q3KQZ1 300 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 FLYWCH1Q4VC44 716 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 RAET1LQ5VY80 246 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 APOOLQ6UXV4 268 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 C16orf62Q7Z3J2 963 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 GALNT10Q86SR1 603 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 CCDC71Q8IV32 467 aaPredicted RBP12.14□□□□□ -0.47
CLK3-216ENST00000564468 CHDHQ8NE62 594 aaPredicted RBP12.14□□□□□ -0.47
CLK3-216ENST00000564468 NEURL3Q96EH8 262 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 LRRC46Q96FV0 321 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 TEX37Q96LM6 180 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 MAGEB18Q96M61 343 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 TRIB1Q96RU8 372 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 RTN4RQ9BZR6 473 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 RMND5AQ9H871 391 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 SDR39U1Q9NRG7 319 aaPredicted RBP12.14□□□□□ -0.47
CLK3-216ENST00000564468 F8P00451 2351 aa12.14□□□□□ -0.47
CLK3-216ENST00000564468 ZFHX3Q15911 3703 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 KIAA1549Q9HCM3 1950 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 A0A0G2JNJ9 132 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 GTPBP1O00178 669 aaKnown RBP12.13□□□□□ -0.47
CLK3-216ENST00000564468 DVL2O14641 736 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 STX11O75558 287 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 GRNP28799 593 aaKnown RBP12.13□□□□□ -0.47
CLK3-216ENST00000564468 IL12AP29459 219 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 CEACAM8P31997 349 aaPredicted RBP12.13□□□□□ -0.47
CLK3-216ENST00000564468 KHKP50053 298 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 LHX2P50458 406 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 ZNF41P51814 821 aaPredicted RBP12.13□□□□□ -0.47
CLK3-216ENST00000564468 DGKQP52824 942 aa12.13□□□□□ -0.47
CLK3-216ENST00000564468 SRYQ05066 204 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms