RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 COL28A1Q2UY09 1125 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 SDE2Q6IQ49 451 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ARL9Q6T311 187 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 NUP43Q8NFH3 380 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 TTLQ8NG68 377 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 TRMT10AQ8TBZ6 339 aaKnown RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 AHCYL2Q96HN2 611 aaKnown RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 KLHL31Q9H511 634 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 KRCC1Q9NPI7 259 aaPredicted RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ATG4BQ9Y4P1 393 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 AUP1Q9Y679 476 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 GSAPA4D1B5 854 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 OR5F1O95221 314 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 PDGFAP04085 211 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ADRB3P13945 408 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 CD53P19397 219 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 CSNK2A2P19784 350 aaPredicted RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 OR10A3P58181 314 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ARHGEF6Q15052 776 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 TRAM1Q15629 374 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ZNF77Q15935 545 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 C6orf132Q5T0Z8 1188 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 MEPCEQ7L2J0 689 aaKnown RBP16.37■□□□□ 0.21
SYNE3-202ENST00000553340 LRRTM4Q86VH4 590 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 TOMM5Q8N4H5 51 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 TOR1AIP2Q8NFQ8 470 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 OR8K5Q8NH50 307 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 CD99L2Q8TCZ2 262 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 HSD17B8Q92506 261 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 ZBP1Q9H171 429 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 CDC42EP2O14613 210 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 ERI3O43414 337 aaKnown RBP16.36■□□□□ 0.21
SYNE3-202ENST00000553340 FZD7O75084 574 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 STATHP02808 62 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 THY1P04216 161 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 ARFIP1P53367 373 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 IKZF1Q13422 519 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 SLC36A2Q495M3 483 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 FAM27D1Q5T7N8 215 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 METRNLQ641Q3 311 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 NIPAL3Q6P499 406 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 LYPD4Q6UWN0 246 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 RAB42Q8N4Z0 105 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 TMEM99Q8N816 258 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 LINC01555Q8NAE3 123 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 OR11H4Q8NGC9 324 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 TIMP4Q99727 224 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 POLMQ9NP87 494 aaPredicted RBP16.36■□□□□ 0.21
SYNE3-202ENST00000553340 COPZ2Q9P299 210 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 NUP50Q9UKX7 468 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 PEPDP12955 493 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 HIST1H1TP22492 207 aaPredicted RBP16.36■□□□□ 0.21
SYNE3-202ENST00000553340 MPIP34949 423 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 MC3RP41968 323 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 GALEQ14376 348 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 CEACAM19Q7Z692 300 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 LRRC20Q8TCA0 184 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 GANCQ8TET4 914 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 OMA1Q96E52 524 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 TM7SF3Q9NS93 570 aa16.36■□□□□ 0.21
SYNE3-202ENST00000553340 SLC9B1P1A6NJY1 282 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 MT-ND5P03915 603 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ADH1AP07327 375 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 SLC35G4P0C7Q5 338 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 CXCL3P19876 107 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 PPM1AP35813 382 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 PRDX1Q06830 199 aaKnown RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 KLHL12Q53G59 568 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 HSD17B12Q53GQ0 312 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ACOT4Q8N9L9 421 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 OR10H4Q8NGA5 316 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 OTUB2Q96DC9 234 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 C1QTNF2Q9BXJ5 285 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 FN3KQ9H479 309 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 HEXA-AS1Q9H8Q6 139 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ABT1Q9ULW3 272 aaKnown RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 LOC105369274A0A096LPK9 316 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 IGKV1-8A0A0C4DH67 115 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 A0A1W2PS29 197 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ZC3H12DA2A288 527 aaKnown RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 SLC9A3R1O14745 358 aaPredicted RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 PLPP2O43688 288 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 FCMRO60667 390 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 MOSPD3O75425 235 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 AIFM1O95831 613 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 GIFP27352 417 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ERN2Q76MJ5 926 aaKnown RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 GET4Q7L5D6 327 aaPredicted RBP16.35■□□□□ 0.21
SYNE3-202ENST00000553340 OR4N4Q8N0Y3 316 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 TMIEQ8NEW7 156 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 OR52L1Q8NGH7 329 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ZFPM2Q8WW38 1151 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 OR8D1Q8WZ84 308 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 ELP4Q96EB1 424 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 COX14Q96I36 57 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 SORCS2Q96PQ0 1159 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 MACROD1Q9BQ69 325 aa16.35■□□□□ 0.21
SYNE3-202ENST00000553340 NDC1Q9BTX1 674 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms