RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FANCMQ8IYD8 2048 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CPED1A4D0V7 1026 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 BLOC1S5-TXNDC5H3BN57 136 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 J3QLW9 94 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 TMCC2O75069 709 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MED26O95402 600 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 PPP1R3DO95685 299 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LALBAP00709 142 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF19P17023 458 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 PAICSP22234 425 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ITPKBP27987 946 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CD40LGP29965 261 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 EMDP50402 254 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ANXA11P50995 505 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 BCAP31P51572 246 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RPL6Q02878 288 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ST3GAL3Q11203 375 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 EIF2B5Q13144 721 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LPAL2Q16609 132 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 C11orf91Q3C1V1 193 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 EOGTQ5NDL2 527 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DCST2Q5T1A1 773 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF425Q6IV72 752 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 FAM131AQ6UXB0 335 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 Q6ZNX1 250 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 Q7L0L9 218 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MCATQ8IVS2 390 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LAX1Q8IWV1 398 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CELF2-AS1Q8N7Q2 184 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 FAM98AQ8NCA5 519 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 OR52I1Q8NGK6 324 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 OR8J1Q8NGP2 316 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 OR6K6Q8NGW6 343 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 TRUB1Q8WWH5 349 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 GAL3ST3Q96A11 431 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF582Q96NG8 517 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 OPALINQ96PE5 141 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 TNFRSF13CQ96RJ3 184 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SDF2Q99470 211 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ELF4Q99607 663 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SPATA9Q9BWV2 254 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 HCAR1Q9BXC0 346 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SLIRPQ9GZT3 109 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 UCKL1Q9NWZ5 548 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CES1P1Q9UKY3 287 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SSR3Q9UNL2 185 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RPL36Q9Y3U8 105 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CHST2Q9Y4C5 530 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 HEBP2Q9Y5Z4 205 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 NBASA2RRP1 2371 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 DOCK7Q96N67 2140 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 C2orf74A8MZ97 194 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FAM25AB3EWG3 89 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FAM25CB3EWG5 89 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FAM25GB3EWG6 89 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 H7C1C5 153 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PRICKLE3O43900 615 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 RAD1O60671 282 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SOX6P35712 828 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SMSP52788 366 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SMIM11AP58511 58 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 CXCR4P61073 352 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 LCN6P62502 163 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 TNFRSF17Q02223 184 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ILKQ13418 452 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 GAS6Q14393 721 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 OR1Q1Q15612 314 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 STEAP3Q658P3 488 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF770Q6IQ21 691 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FRRS1Q6ZNA5 592 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ABHD13Q7L211 337 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 GLCCI1Q86VQ1 547 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PARP16Q8N5Y8 322 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF321PQ8N8H1 164 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 UBASH3BQ8TF42 649 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PIGKQ92643 395 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ZMYND19Q96E35 227 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 PRRC1Q96M27 445 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HSPA12BQ96MM6 686 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF681Q96N22 645 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 TRNT1Q96Q11 434 aaKnown RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 SLC38A2Q96QD8 506 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 DCLRE1CQ96SD1 692 aaKnown RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 GSDMCQ9BYG8 508 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 MMP28Q9H239 520 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ISG20L2Q9H9L3 353 aaKnown RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 TRPV4Q9HBA0 871 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HHATLQ9HCP6 504 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 POLMQ9NP87 494 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HINT3Q9NQE9 182 aaKnown RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 FAIMQ9NVQ4 179 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 OBP2AQ9NY56 170 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 KCNE5Q9UJ90 142 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF443Q9Y2A4 671 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-215ENST00000552823 A0A0G2JPF8 293 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 URADA6NGE7 173 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 C12orf71A8MTZ7 269 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HNRNPCL2B2RXH8 293 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 HNRNPCL3B7ZW38 293 aa5.2□□□□□ -1.58
LIMA1-215ENST00000552823 RPP14O95059 124 aaKnown RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms