RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 TRIM64A6NGJ6 449 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 TRIM64BA6NI03 449 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 ALG1L2C9J202 215 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 SMAD7O15105 426 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 ADAMDEC1O15204 470 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 RSL1D1O76021 490 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 CNOT4O95628 575 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 PLGP00747 810 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 THBDP07204 575 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 LCN1P31025 176 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 GABRA3P34903 492 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 MAP3K8P41279 467 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 EIF1AXP47813 144 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 CTBP2P56545 445 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 PPP2R2BQ00005 443 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 GRAMD1BQ3KR37 738 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 BEND6Q5SZJ8 279 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 NOXRED1Q6NXP6 359 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 APOOLQ6UXV4 268 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 STAC2Q6ZMT1 411 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 BEND4Q6ZU67 534 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 TRMT10CQ7L0Y3 403 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 WDR75Q8IWA0 830 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 GTPBP8Q8N3Z3 284 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 CDC26Q8NHZ8 85 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 ACTRT2Q8TDY3 377 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 TMEM171Q8WVE6 324 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 ZBTB8AQ96BR9 441 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 ADGRG7Q96K78 797 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 PRRG4Q9BZD6 226 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 IQCGQ9H095 443 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 CXorf56Q9H5V9 222 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 NTMQ9P121 344 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 MCTS1Q9ULC4 181 aaKnown RBP11.52□□□□□ -0.57
PTCH1-218ENST00000548945 NPIPB8E9PQR5 432 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 UBFD1O14562 309 aaKnown RBP11.51□□□□□ -0.57
PTCH1-218ENST00000548945 EIF1AYO14602 144 aaKnown RBP11.51□□□□□ -0.57
PTCH1-218ENST00000548945 NKX2-2O95096 273 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 IGKV1D-16P01601 117 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 PRPS2P11908 318 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 PRPH2P23942 346 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 PCSK6P29122 969 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 SLC6A8P48029 635 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 FOXA1P55317 472 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 RAC1P63000 192 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 SLC29A2Q14542 456 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 EXOC3L2Q2M3D2 409 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 ANKRD34AQ69YU3 496 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF704Q6ZNC4 412 aaPredicted RBP11.51□□□□□ -0.57
PTCH1-218ENST00000548945 ESPNLQ6ZVH7 1005 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 STK32CQ86UX6 486 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 EXOC3L1Q86VI1 746 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 CCNYL1Q8N7R7 359 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF611Q8N823 705 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 CDRT4Q8N9R6 151 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 OR10D3Q8NH80 312 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 CEP70Q8NHQ1 597 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 GPR151Q8TDV0 419 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 TMEM204Q9BSN7 226 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 DCDC2Q9UHG0 476 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 VDAC3Q9Y277 283 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 GPR52Q9Y2T5 361 aa11.51□□□□□ -0.57
PTCH1-218ENST00000548945 POLR3HQ9Y535 204 aaPredicted RBP11.51□□□□□ -0.57
PTCH1-218ENST00000548945 GXYLT2A0PJZ3 443 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 HS3ST1O14792 307 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 PDPK1O15530 556 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 NDUFB5O43674 189 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 TBX19O60806 448 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 SYNGR4O95473 234 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 OXSR1O95747 527 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 PSMB1P20618 241 aaKnown RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 ME2P23368 584 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 PSMA4P25789 261 aaKnown RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 RFX3P48380 749 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 CTU2Q2VPK5 515 aaKnown RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 PDSS1Q5T2R2 415 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 CPTPQ5TA50 214 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 GTF2IRD2BQ6EKJ0 949 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 ADAM5Q6NVV9 412 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 ZYG11AQ6WRX3 759 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 FRMD7Q6ZUT3 714 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 ZNF551Q7Z340 670 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 GTF2IRD2Q86UP8 949 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 MISPQ8IVT2 679 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 OR6Y1Q8NGX8 325 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 OR4C3Q8NH37 302 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 ZFP28Q8NHY6 868 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 FAM110BQ8TC76 370 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 PSMC3IPQ9P2W1 217 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-218ENST00000548945 CCL27Q9Y4X3 112 aa11.5□□□□□ -0.57
PTCH1-218ENST00000548945 A0A1W2PRB8 838 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 KIAA1324LA8MWY0 1029 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-218ENST00000548945 SHISA8B8ZZ34 492 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 INAFM1C9JVW0 142 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 G3V2L1 256 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 RIPK2O43353 540 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 CRCPO75575 148 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 HSPA4LO95757 839 aa11.49□□□□□ -0.57
PTCH1-218ENST00000548945 PABPC4LP0CB38 370 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms