RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SMC3Q9UQE7 1217 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 PCNX3Q9H6A9 2034 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 A0A087WWV3 80 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 PPIAL4CA0A0B4J2A2 164 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 FRG2CA6NGY1 282 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 A8MX80 341 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 PPIAL4DF5H284 164 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 K7EQM0 130 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ZSCAN12O43309 604 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 GPRIN2O60269 458 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 RAMP1O60894 148 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 B3GAT3O94766 335 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 F10P00742 488 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 IGF1P05019 195 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 IQCF3P0C7M6 154 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 CT45A10P0DMU9 189 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 PPIAL4GP0DN37 164 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ATP5A1P25705 553 aaKnown RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 CDH5P33151 784 aaPredicted RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 RGS4P49798 205 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 HNMTP50135 292 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ARFIP1P53367 373 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 LIM2P55344 173 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ERVPABLB-1P60509 514 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 RPL8P62917 257 aaKnown RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 BDH1Q02338 343 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 SELPLGQ14242 412 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ATXN7L3Q14CW9 347 aaPredicted RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 CYP51A1Q16850 503 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 TIMM50Q3ZCQ8 353 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 OR8G2PQ6IF36 304 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 KCNIP4Q6PIL6 250 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 STAC2Q6ZMT1 411 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 GCNT7Q6ZNI0 430 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 IFNEQ86WN2 208 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 TBC1D21Q8IYX1 336 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 LYG1Q8N1E2 194 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 LINC01561Q8N1V8 128 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 Q8N9G6 341 aaPredicted RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 DENND6BQ8NEG7 585 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 RHOXF1Q8NHV9 184 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 RAET1EQ8TD07 263 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 CTNNBL1Q8WYA6 563 aaPredicted RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 PPP1R16AQ96I34 528 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ZNF607Q96SK3 696 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 TXN2Q99757 166 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 ELOVL3Q9HB03 270 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 MIEF1Q9NQG6 463 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.17□□□□□ -1.9
VPS29-205ENST00000548539 MRPL39Q9NYK5 338 aaKnown RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 GALPQ9UBC7 116 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 CRLS1Q9UJA2 301 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 GSTK1Q9Y2Q3 226 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 OR10H1Q9Y4A9 318 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 CSAG2Q9Y5P2 127 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 GMPPBQ9Y5P6 360 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 USP6P35125 1406 aa3.17□□□□□ -1.9
VPS29-205ENST00000548539 TDRD15B5MCY1 1934 aaKnown RBP3.17□□□□□ -1.9
VPS29-205ENST00000548539 A0A1W2PNU3 283 aaPredicted RBP3.16□□□□□ -1.9
VPS29-205ENST00000548539 GSAPA4D1B5 854 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 FCN1O00602 326 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 TBX19O60806 448 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 BCAS1O75363 584 aaPredicted RBP3.16□□□□□ -1.9
VPS29-205ENST00000548539 KIAA0754O94854 1291 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 GJB5O95377 273 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 OPN1LWP04000 364 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 HBQ1P09105 142 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 CPN1P15169 458 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 PGAM2P15259 253 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 SLC8A3P57103 927 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 ST3GAL3Q11203 375 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 ZNF154Q13106 437 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 SERTAD2Q14140 314 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 FAM120AOSQ5T036 256 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 ATAD3BQ5T9A4 648 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 PYHIN1Q6K0P9 492 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 PPP1R42Q7Z4L9 355 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 SERINC5Q86VE9 423 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 SPAG16Q8N0X2 631 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 LRRC43Q8N309 656 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 CSNK1A1LQ8N752 337 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 TYMSOSQ8TAI1 123 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 TRUB1Q8WWH5 349 aaKnown RBP3.16□□□□□ -1.9
VPS29-205ENST00000548539 PYGO2Q9BRQ0 406 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 GNG12Q9UBI6 72 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 TBK1Q9UHD2 729 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 CYTH4Q9UIA0 394 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 SPACA6W5XKT8 324 aa3.16□□□□□ -1.9
VPS29-205ENST00000548539 OR6C65A6NJZ3 312 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 GPR89AB7ZAQ6 455 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 SLC17A2O00624 439 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 TRIM3O75382 744 aaPredicted RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 GPR89BP0CG08 455 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 BCKDHAP12694 445 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 NT5EP21589 574 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 CHI3L1P36222 383 aaPredicted RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 RPL34P49207 117 aaKnown RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 PLA2G16P53816 162 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 CXCL6P80162 114 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 CCDC152Q4G0S7 254 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms