RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 PTGDR2Q9Y5Y4 395 aa7□□□□□ -1.29
SNHG1-223ENST00000545440 C15orf38-AP3S2A0A0A6YYH1 394 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 C19orf84I3L1E1 186 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 SCDO00767 359 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 LSM1O15116 133 aaKnown RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TYROBPO43914 113 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TSPAN2O60636 221 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TBX19O60806 448 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 SEC22BO75396 215 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 JUNP05412 331 aaKnown RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 CHRNGP07510 517 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PRF1P14222 555 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 IGFBP2P18065 325 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 SDC1P18827 310 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PTPN6P29350 595 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 IL12BP29460 328 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 KRT20P35900 424 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PTGDSP41222 190 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 MC3RP41968 323 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ASMTP46597 345 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PNLIPRP2P54317 469 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 RPL38P63173 70 aaKnown RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 MRPS22P82650 360 aaKnown RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PSG6Q00889 435 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TFF3Q07654 80 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PMPCAQ10713 525 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ZNF155Q12901 538 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PDE7AQ13946 482 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 EFR3AQ14156 821 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 XKR7Q5GH72 579 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ARL13AQ5H913 290 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 RTL6Q6ICC9 239 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TMEM107Q6UX40 140 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ANGPTL8Q6UXH0 198 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 NPSR1Q6W5P4 371 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 Q6ZSR9 355 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 PM20D2Q8IYS1 436 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 OR1J4Q8NGS1 313 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 LILRB4Q8NHJ6 448 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ZFP28Q8NHY6 868 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 RNF138Q8WVD3 245 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TWIST2Q8WVJ9 160 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 FAM168AQ92567 244 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TMCO6Q96DC7 493 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 AMDHD1Q96NU7 426 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 GNRHR2Q96P88 292 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 NODALQ96S42 347 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 MECRQ9BV79 373 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TRIM8Q9BZR9 551 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 TUBB1Q9H4B7 451 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 GLIPR2Q9H4G4 154 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 ANKRA2Q9H9E1 313 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 DDX18Q9NVP1 670 aaKnown RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 SLC17A7Q9P2U7 560 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 RAB21Q9UL25 225 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 C19orf53Q9UNZ5 99 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 FIS1Q9Y3D6 152 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 WIF1Q9Y5W5 379 aa6.99□□□□□ -1.29
SNHG1-223ENST00000545440 V9GYY5 206 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-223ENST00000545440 A0A0G2JNJ9 132 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TTC36A6NLP5 189 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 FAM90A27PA6NNH2 459 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 AHRRA9YTQ3 701 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TMEM114B3SHH9 223 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TMEM233B4DJY2 109 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 UPK1AO00322 258 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ICOSLGO75144 302 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 SPAG7O75391 227 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 REM1O75628 298 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TRAPPC6AO75865 159 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TOXO94900 526 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ACTL6AO96019 429 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TUBBP07437 444 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 DDX5P17844 614 aaKnown RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 SSTR2P30874 369 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 EVI2BP34910 448 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 GCKP35557 465 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 FRKP42685 505 aaPredicted RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ETV4P43268 484 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ZFP36L2P47974 494 aaKnown RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 TRPC1P48995 793 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 PRR5P85299 388 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ZNF844Q08AG5 666 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 SF3B4Q15427 424 aaKnown RBP eCLIP6.98□□□□□ -1.294e-47■■■■■ 46.5
SNHG1-223ENST00000545440 ZNHIT3Q15649 155 aaPredicted RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 SLC25A35Q3KQZ1 300 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 UGT3A2Q3SY77 523 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 KRT71Q3SY84 523 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ACSF3Q4G176 576 aaPredicted RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 RFTN2Q52LD8 501 aaPredicted RBP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 SH2D4BQ5SQS7 431 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 RIPPLY2Q5TAB7 128 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 VASNQ6EMK4 673 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ZCCHC23Q6ZST2 131 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 LARP4Q71RC2 724 aaKnown RBP eCLIP6.98□□□□□ -1.29
SNHG1-223ENST00000545440 LACC1Q8IV20 430 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 DDIASQ8IXT1 998 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 ULK2Q8IYT8 1036 aa6.98□□□□□ -1.29
SNHG1-223ENST00000545440 CLYBLQ8N0X4 340 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms