RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 EMC9Q9Y3B6 208 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 DNAJC15Q9Y5T4 150 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 PTGDR2Q9Y5Y4 395 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 TLDC2A0PJX2 215 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 C7orf72A4D263 438 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 C16orf97H3BN30 126 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 EIF1AYO14602 144 aaKnown RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 CTIFO43310 598 aaKnown RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 OXSR1O95747 527 aaPredicted RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 FGF4P08620 206 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 KRT16P08779 473 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 TBXA2RP21731 343 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 UGT2B10P36537 528 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 MAP3K8P41279 467 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 KIR2DL2P43627 348 aaPredicted RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 CLDN15P56746 228 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 CLDN20P56880 219 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 IFFO1Q0D2I5 559 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 MLC1Q15049 377 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 TMEM44Q2T9K0 475 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 KRTAP21-3Q3LHN1 58 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 RFTN2Q52LD8 501 aaPredicted RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 PPP4R4Q6NUP7 873 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 FAM214BQ7L5A3 538 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 BTLAQ7Z6A9 289 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 GTPBP8Q8N3Z3 284 aaPredicted RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 ZNF527Q8NB42 609 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 OR5M1Q8NGP8 315 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 OR2T11Q8NH01 316 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 CLHC1Q8NHS4 586 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 ACTRT2Q8TDY3 377 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 TWIST2Q8WVJ9 160 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 JADE3Q92613 823 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 RTN4RQ9BZR6 473 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 OPN3Q9H1Y3 402 aaPredicted RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 C12orf65Q9H3J6 166 aaKnown RBP11.81□□□□□ -0.52
RTN3-213ENST00000543552 VDAC3Q9Y277 283 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 TRAF6Q9Y4K3 522 aa11.81□□□□□ -0.52
RTN3-213ENST00000543552 A0A1W2PQD3 144 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 H0YC42 278 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 SCAMP2O15127 329 aaKnown RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 ARHGEF9O43307 516 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 GMFGO60234 142 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 LYPLA1O75608 230 aaPredicted RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 KCNK2O95069 426 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 SYNGR4O95473 234 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 IGKV1D-16P01601 117 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 BCKDHAP12694 445 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 PPP3CBP16298 524 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ATP6V1C1P21283 382 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 EIF1AXP47813 144 aaKnown RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 SUCLG1P53597 346 aaKnown RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 TPD52P55327 224 aaPredicted RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 CTBP2P56545 445 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ADAM8P78325 824 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 FAM27E3Q08E93 113 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ATP6AP1LQ52LC2 224 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ZNF385BQ569K4 471 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 PDSS1Q5T2R2 415 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 STK32CQ86UX6 486 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 EXOC3L1Q86VI1 746 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 BANPQ8N9N5 519 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 SLC16A11Q8NCK7 471 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 OR6K3Q8NGY3 331 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 FBXO30Q8TB52 745 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 PIGTQ969N2 578 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 CHMP6Q96FZ7 201 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 GMPPAQ96IJ6 420 aaPredicted RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 STACQ99469 402 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 PRPF18Q99633 342 aaKnown RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 BTBD2Q9BX70 525 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 TUBB1Q9H4B7 451 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 DUSP22Q9NRW4 184 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 GLRX2Q9NS18 164 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ZCCHC3Q9NUD5 404 aaKnown RBP11.8□□□□□ -0.52
RTN3-213ENST00000543552 KLHL28Q9NXS3 571 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 BAIAP2L1Q9UHR4 511 aa11.8□□□□□ -0.52
RTN3-213ENST00000543552 ACANP16112 2415 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 A0A1W2PRB8 838 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 H3BNH8 94 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 PIP5K1BO14986 540 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 DIAPH2O60879 1101 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 CHRNGP07510 517 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 NUDT17P0C025 328 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 ACP2P11117 423 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 CD53P19397 219 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 FPR1P21462 350 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 CRYGSP22914 178 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 ALDH3A1P30838 453 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 EIF1P41567 113 aaKnown RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 RAC1P63000 192 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 POU6F2P78424 691 aaPredicted RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 DUSP5Q16690 384 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 LSM12Q3MHD2 195 aaKnown RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 ARL13AQ5H913 290 aaPredicted RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 CPTPQ5TA50 214 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 SHEQ5VZ18 495 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GTF2IRD2BQ6EKJ0 949 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 FIGNL1Q6PIW4 674 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms