RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TCTN2Q96GX1 697 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CDADC1Q9BWV3 514 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 RNF167Q9H6Y7 350 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CLDN16Q9Y5I7 305 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 TGFBR3LH3BV60 316 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 PEX12O00623 359 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 PIP5K1CO60331 668 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 HSMCR30P0CW71 290 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CD38P28907 300 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 ARPC4P59998 168 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 POU6F2P78424 691 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.79□□□□□ -0.36
RTN3-210ENST00000540798 MINDY4Q4G0A6 757 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 MRPL2Q5T653 305 aaKnown RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 FAAH2Q6GMR7 532 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CADM4Q8NFZ8 388 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 OR4Q3Q8NH05 313 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 MCFD2Q8NI22 146 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CHRNA10Q9GZZ6 450 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 MED17Q9NVC6 651 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 NLGN3Q9NZ94 848 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 FBXO9Q9UK97 447 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 CEP192Q8TEP8 1941 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 GXYLT2A0PJZ3 443 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 TRAPPC13A5PLN9 417 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 SURF4O15260 269 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 HRO43593 1189 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 PRG2P13727 222 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 RAB40BQ12829 278 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 MLLT11Q13015 90 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 KLHL22Q53GT1 634 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 NIPAL1Q6NVV3 410 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 GKN2Q86XP6 184 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 SLC34A3Q8N130 599 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CACTIN-AS1Q8N1I8 211 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 VWA5B2Q8N398 1253 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 NDUFB11Q9NX14 153 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 COLQQ9Y215 455 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 PRELID1Q9Y255 219 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 IRGMA1A4Y4 181 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 A6NL46 340 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 GPX5O75715 221 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 CKMT1AP12532 417 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 GNSP15586 552 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 DRD5P21918 477 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 INAQ16352 499 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 GDPGP1Q6ZNW5 385 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 RNF113BQ8IZP6 322 aaKnown RBP12.78□□□□□ -0.36
RTN3-210ENST00000540798 OR52R1Q8NGF1 315 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 GPR151Q8TDV0 419 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 COX4I2Q96KJ9 171 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 SLC38A2Q96QD8 506 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 CHCHD6Q9BRQ6 235 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 PRRG3Q9BZD7 231 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 CA14Q9ULX7 337 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 CDH10Q9Y6N8 788 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 KCNK2O95069 426 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 GABRA3P34903 492 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 PSG6Q00889 435 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 FAM53BQ14153 422 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 AADACL4Q5VUY2 407 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 WDR88Q6ZMY6 472 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 RRM2BQ7LG56 351 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 CENPSQ8N2Z9 138 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 AMER2Q8N7J2 671 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 ADAMTS18Q8TE60 1221 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 PPP1R14BQ96C90 147 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 MAP3K3Q99759 626 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 ENAMQ9NRM1 1142 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 TRIOO75962 3097 aa12.78□□□□□ -0.36
RTN3-210ENST00000540798 LOC100506127A0A0U1RQW1 187 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 CDC42EP2O14613 210 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 CTNSO60931 367 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 NSA2O95478 260 aaKnown RBP12.77□□□□□ -0.36
RTN3-210ENST00000540798 PROS1P07225 676 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 RNH1P13489 461 aaKnown RBP12.77□□□□□ -0.36
RTN3-210ENST00000540798 ETV5P41161 510 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 GPR4P46093 362 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 EMDP50402 254 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 ETV1P50549 477 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 RACK1P63244 317 aaKnown RBP12.77□□□□□ -0.36
RTN3-210ENST00000540798 IFITM3Q01628 133 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 ITGADQ13349 1161 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 OR1Q1Q15612 314 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 RGS21Q2M5E4 152 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 FAM209AQ5JX71 171 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 TUBA3EQ6PEY2 450 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 OGFOD3Q6PK18 319 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 ZAR1Q86SH2 424 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 GRAMD2AQ8IUY3 354 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 GALNT12Q8IXK2 581 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 ZNF595Q8IYB9 648 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 ANKK1Q8NFD2 765 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 BRIX1Q8TDN6 353 aaKnown RBP12.77□□□□□ -0.36
RTN3-210ENST00000540798 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.77□□□□□ -0.36
RTN3-210ENST00000540798 FBXL21Q9UKT6 434 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 CLCA2Q9UQC9 943 aa12.77□□□□□ -0.36
RTN3-210ENST00000540798 A0A0A6YYC8 382 aaPredicted RBP12.77□□□□□ -0.37
RTN3-210ENST00000540798 HYKKA2RU49 373 aa12.77□□□□□ -0.37
RTN3-210ENST00000540798 I3L1I5 382 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms